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    AT1G02420 Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837779, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G02420
    Gene description
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    Araport:AT1G02420
    Locus tag
    AT1G02420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6A9.11; T6A9_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (493639..495158)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene proline-rich family protein Neighboring gene cytochrome c oxidase assembly protein CtaG / Cox11 family Neighboring gene ncRNA Neighboring gene ADP-ribosylation factor D1B Neighboring gene ncRNA Neighboring gene ADP-ribosylation factor D1A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_100123.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_171744.1
    • Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G61360.1); Has 33079 Blast hits to 11325 proteins in 263 species: Archae - 4; Bacteria - 36; Metazoa - 353; Fungi - 350; Plants - 31222; Viruses - 0; Other Eukaryotes - 1114 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      493639..495158
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100123.2 → NP_171744.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171744.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FZ19
      UniProtKB/TrEMBL
      A0A178WHC0, A0A5S9S7N8, A0A654E892
      Conserved Domains (3) summary
      PLN03218
      Location:237 → 405
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:248 → 275
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:179 → 258
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZ19.2

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