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    LpxD2 Trimeric LpxA-like enzymes superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827871, updated on 7-Sep-2023

    Summary

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    Gene symbol
    LpxD2
    Gene description
    Trimeric LpxA-like enzymes superfamily protein
    Primary source
    Araport:AT4G21220
    Locus tag
    AT4G21220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtLpxD2; F7J7.160; F7J7_160; lipid X D2
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    Genomic context

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    See LpxD2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (11316828..11319137, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 27 Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pathway for lipid A biosynthesis in Arabidopsis thaliana resembling that of Escherichia coli. Li C, et al. Proc Natl Acad Sci U S A, 2011 Jul 12. PMID 21709257, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_118241.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within lipid X metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Trimeric LpxA-like enzymes superfamily protein
    NP_193854.2
    • Trimeric LpxA-like enzymes superfamily protein; FUNCTIONS IN: transferase activity; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzymes superfamily protein (TAIR:AT4G05210.1); Has 11236 Blast hits to 11169 proteins in 1804 species: Archae - 57; Bacteria - 7331; Metazoa - 7; Fungi - 9; Plants - 63; Viruses - 0; Other Eukaryotes - 3769 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11316828..11319137 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118241.3 → NP_193854.2  Trimeric LpxA-like enzymes superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193854.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JIP6, O49563
      UniProtKB/TrEMBL
      A0A5S9XV22, A0A654FRG4
      Conserved Domains (1) summary
      PRK00892
      Location:84 → 295
      lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JIP6.1

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