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    AT1G68580 Agenet and bromo-adjacent homology (BAH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843187, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G68580
    Gene description
    Agenet and bromo-adjacent homology (BAH) domain-containing protein
    Primary source
    Araport:AT1G68580
    Locus tag
    AT1G68580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24J5.18; F24J5_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (25752624..25756113)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein PSRP-3/Ycf65 Neighboring gene aluminum activated malate transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001334369.1
    NM_001334372.1
    NM_105529.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Agenet and bromo-adjacent homology (BAH) domain-containing protein
    NP_001319349.1
    • agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 202 Blast hits to 186 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_177025.2
    • agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 284 Blast hits to 251 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25752624..25756113
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334370.1 → NP_001321496.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR30, A0A5S9WSZ6
      Conserved Domains (3) summary
      cd04721
      Location:48 → 175
      BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
      cd20403
      Location:359 → 404
      Tudor_Agenet_FMRP-like_rpt2; second Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family
      cd20405
      Location:267 → 325
      Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)

    2. NM_001334371.1 → NP_001321498.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR80, A0A7G2E489
      Conserved Domains (3) summary
      cd04721
      Location:144 → 271
      BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
      cd20403
      Location:455 → 500
      Tudor_Agenet_FMRP-like_rpt2; second Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family
      cd20405
      Location:363 → 421
      Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)

    3. NM_105529.4 → NP_177025.2  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177025.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W262, A0A5S9WSZ6, Q8L7Q0
      Conserved Domains (3) summary
      cd04721
      Location:144 → 271
      BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
      cd20403
      Location:455 → 500
      Tudor_Agenet_FMRP-like_rpt2; second Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family
      cd20405
      Location:363 → 421
      Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)

    4. NM_001334372.1 → NP_001321497.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR23, A0A5S9WSZ6

    5. NM_001334369.1 → NP_001319349.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E489, F4HXB8
    Nucleotide Protein
    Heading Accession and Version

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