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    AT2G30100 pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817561, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT2G30100
    Gene description
    pentatricopeptide (PPR) repeat-containing protein
    Primary source
    Araport:AT2G30100
    Locus tag
    AT2G30100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27E13.16; T27E13_16
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (12847518..12849708)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene potassium transporter 1 Neighboring gene ZIP metal ion transporter family Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene LRR/ubiquitin-like domain protein Neighboring gene ubiquitin-activating enzyme 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_128565.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pentatricopeptide (PPR) repeat-containing protein
    NP_180571.3
    • pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G04810.1); Has 68862 Blast hits to 30982 proteins in 1167 species: Archae - 27; Bacteria - 7834; Metazoa - 26033; Fungi - 2446; Plants - 28670; Viruses - 2; Other Eukaryotes - 3850 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12847518..12849708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128565.5 → NP_180571.3  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180571.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64736, Q0WNN7
      UniProtKB/TrEMBL
      A0A178VX94, A0A654EXE2
      Conserved Domains (1) summary
      sd00004
      Location:348 → 371
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WNN7.2

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