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    ELF4-L4 ELF4-like 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838318, updated on 7-Sep-2023

    Summary

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    Gene symbol
    ELF4-L4
    Gene description
    ELF4-like 4
    Primary source
    Araport:AT1G17455
    Locus tag
    AT1G17455
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ELF4-like 4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (5997057..5998599)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Transcription initiation factor TFIID subunit A Neighboring gene B-block binding subunit of TFIIIC Neighboring gene TRF-like 3 Neighboring gene developmentally regulated G-protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Integrating ELF4 into the circadian system through combined structural and functional studies. Kolmos E, et al. HFSP J, 2009 Oct. PMID 20357892, Free PMC Article
    2. Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry. Huang H, et al. Mol Cell Proteomics, 2016 Jan. PMID 26545401, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001160876.1
    NM_101607.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in photoperiodism IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in positive regulation of circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    ELF4-like 4
    NP_001154348.1
    • ELF4-like 4 (ELF4-L4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 2 (TAIR:AT1G72630.1); Has 149 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_564024.1
    • ELF4-like 4 (ELF4-L4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 2 (TAIR:AT1G72630.1); Has 149 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5997057..5998599
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101607.4 → NP_564024.1  ELF4-like 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564024.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q570U6, Q8LEX9, Q9LDC8
      UniProtKB/TrEMBL
      A0A178WKX5, A0A5S9UVR8
      Conserved Domains (1) summary
      pfam07011
      Location:15 → 96
      DUF1313; Protein of unknown function (DUF1313)

    2. NM_001160876.1 → NP_001154348.1  ELF4-like 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154348.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q570U6, Q8LEX9, Q9LDC8
      UniProtKB/TrEMBL
      A0A178WKX5, A0A5S9UVR8
      Conserved Domains (1) summary
      pfam07011
      Location:15 → 96
      DUF1313; Protein of unknown function (DUF1313)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q570U6.1

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