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    AT5G62560 RING/U-box superfamily protein with ARM repeat domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836376, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G62560
    Gene description
    RING/U-box superfamily protein with ARM repeat domain-containing protein
    Primary source
    Araport:AT5G62560
    Locus tag
    AT5G62560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K19B1.17; K19B1_17
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (25109840..25112001)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 12A1 Neighboring gene uncharacterized protein Neighboring gene ubiquitin-conjugating enzyme 3 Neighboring gene microtubule-associated futsch-like protein Neighboring gene Calmodulin binding protein-like protein Neighboring gene uncharacterized protein Neighboring gene succinate dehydrogenase subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125650.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein with ARM repeat domain-containing protein
    NP_201062.1
    • RING/U-box superfamily protein with ARM repeat domain; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PLANT U-BOX 39 (TAIR:AT3G47820.1); Has 4205 Blast hits to 2838 proteins in 224 species: Archae - 0; Bacteria - 12; Metazoa - 617; Fungi - 508; Plants - 2679; Viruses - 0; Other Eukaryotes - 389 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25109840..25112001
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125650.4 → NP_201062.1  RING/U-box superfamily protein with ARM repeat domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201062.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WUF6, Q8L7M5, Q9FJJ0
      UniProtKB/TrEMBL
      A0A178UIB3, A0A5S9YGF0
      Conserved Domains (3) summary
      smart00504
      Location:34 → 97
      Ubox; Modified RING finger domain
      PLN03200
      Location:295 → 512
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:278 → 303
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WUF6.1

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