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    TPS10 trehalose phosphate synthase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842309, updated on 7-Sep-2023

    Summary

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    Gene symbol
    TPS10
    Gene description
    trehalose phosphate synthase
    Primary source
    Araport:AT1G60140
    Locus tag
    AT1G60140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTPS10; T13D8.4; T13D8_4; trehalose phosphate synthase; TREHALOSE PHOSPHATE SYNTHASE 10
    Summary
    Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (22176934..22181740, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene pseudo Neighboring gene Potassium transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive expression regulation and lack of heterologous enzymatic activity of the Class II trehalose metabolism proteins from Arabidopsis thaliana. Ramon M, et al. Plant Cell Environ, 2009 Aug. PMID 19344332
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001333882.1
    NM_001333883.1
    NM_001333884.1
    NM_001333886.1
    NM_104705.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    NOT enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    NOT enables trehalose-phosphatase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in trehalose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    trehalose phosphate synthase
    NP_176221.1
    • trehalose phosphate synthase (TPS10); FUNCTIONS IN: transferase activity, transferring glycosyl groups, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 9 (TAIR:AT1G23870.1); Has 4634 Blast hits to 4564 proteins in 1018 species: Archae - 52; Bacteria - 2697; Metazoa - 162; Fungi - 655; Plants - 601; Viruses - 0; Other Eukaryotes - 467 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22176934..22181740 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333885.1 → NP_001322703.1  trehalose phosphate synthase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80738, Q0WP88
      UniProtKB/TrEMBL
      A0A5S9WQT2, A0A654EL48, W8Q795
      Conserved Domains (1) summary
      PLN02205
      Location:1 → 843
      PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

    2. NM_104705.4 → NP_176221.1  trehalose phosphate synthase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176221.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80738, Q0WP88
      UniProtKB/TrEMBL
      A0A5S9WQT2, A0A654EL48, W8Q795
      Conserved Domains (1) summary
      PLN02205
      Location:1 → 843
      PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

    3. NM_001333883.1 → NP_001322704.1  trehalose phosphate synthase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUV4, A0A5S9WQT2

    4. NM_001333884.1 → NP_001322706.1  trehalose phosphate synthase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80738, Q0WP88
      UniProtKB/TrEMBL
      A0A5S9WQT2, A0A654EL48, W8Q795
      Conserved Domains (1) summary
      PLN02205
      Location:1 → 843
      PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

    5. NM_001333882.1 → NP_001322705.1  trehalose phosphate synthase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80738, Q0WP88
      UniProtKB/TrEMBL
      A0A5S9WQT2, A0A654EL48, W8Q795
      Conserved Domains (1) summary
      PLN02205
      Location:1 → 843
      PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

    6. NM_001333886.1 → NP_001322702.1  trehalose phosphate synthase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80738, Q0WP88
      UniProtKB/TrEMBL
      A0A5S9WQT2, A0A654EL48, W8Q795
      Conserved Domains (1) summary
      PLN02205
      Location:1 → 843
      PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80738.1

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