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    AT3G59470 Far-red impaired responsive (FAR1) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825116, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G59470
    Gene description
    Far-red impaired responsive (FAR1) family protein
    Primary source
    Araport:AT3G59470
    Locus tag
    AT3G59470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (21978810..21980839, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene F-box/LRR protein Neighboring gene pfkB-like carbohydrate kinase family protein Neighboring gene uncharacterized protein Neighboring gene Integral membrane HRF1 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptional, posttranscriptional, and posttranslational regulation of SHOOT MERISTEMLESS gene expression in Arabidopsis determines gene function in the shoot apex. Aguilar-Martínez JA, et al. Plant Physiol, 2015 Feb. PMID 25524441, Free PMC Article
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001339981.1
    NM_001339982.1
    NM_115809.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cis-regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Far-red impaired responsive (FAR1) family protein
    NP_001319800.1
    • Far-red impaired responsive (FAR1) family protein; INVOLVED IN: response to red or far red light; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: Far-red impaired responsive (FAR1) family protein (TAIR:AT3G07500.1).
    NP_567085.1
    • Far-red impaired responsive (FAR1) family protein; CONTAINS InterPro DOMAIN/s: Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: Far-red impaired responsive (FAR1) family protein (TAIR:AT3G07500.1); Has 865 Blast hits to 808 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21978810..21980839 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339981.1 → NP_001319800.1  Far-red impaired responsive (FAR1) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XM96, F4J8B6
      Conserved Domains (2) summary
      PLN03097
      Location:19 → 230
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam03101
      Location:97 → 184
      FAR1; FAR1 DNA-binding domain

    2. NM_115809.2 → NP_567085.1  Far-red impaired responsive (FAR1) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567085.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKW5, A0A384KKS1, A0A5S9XM96, Q93Z68
      Conserved Domains (2) summary
      PLN03097
      Location:7 → 218
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam03101
      Location:85 → 172
      FAR1; FAR1 DNA-binding domain

    3. NM_001339982.1 → NP_001326133.1  Far-red impaired responsive (FAR1) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKW5, A0A384KKS1, A0A5S9XM96, Q93Z68
      Conserved Domains (2) summary
      PLN03097
      Location:7 → 218
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam03101
      Location:85 → 172
      FAR1; FAR1 DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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