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    emb1579 ATP/GTP-binding protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814844, updated on 6-Oct-2023

    Summary

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    Gene symbol
    emb1579
    Gene description
    ATP/GTP-binding protein family
    Primary source
    Araport:AT2G03150
    Locus tag
    AT2G03150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo defective 1579; RSA1; SHORT ROOT IN SALT MEDIUM 1; T18E12.18; T18E12_18
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    19
    Sequence:
    Chromosome: 2; NC_003071.7 (951888..959236)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene SKP1-like 19 Neighboring gene SKP1-like 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phase separation of Arabidopsis EMB1579 controls transcription, mRNA splicing, and development. Zhang Y, et al. PLoS Biol, 2020 Jul. PMID 32692742, Free PMC Article
    2. A nuclear calcium-sensing pathway is critical for gene regulation and salt stress tolerance in Arabidopsis. Guan Q, et al. PLoS Genet, 2013 Aug. PMID 24009530, Free PMC Article
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Phase separation of Arabidopsis EMB1579 controls transcription, mRNA splicing, and development.
      Title: Phase separation of Arabidopsis EMB1579 controls transcription, mRNA splicing, and development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001335170.1
    NM_126366.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to salt stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within sodium ion homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP/GTP-binding protein family
    NP_178414.2
    • embryo defective 1579 (emb1579); FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      951888..959236
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126366.5 → NP_178414.2  ATP/GTP-binding protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178414.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IS91, O81059, Q0WQ79, Q8W4H5
      UniProtKB/TrEMBL
      A0A178W0U1
      Conserved Domains (3) summary
      pfam14443
      Location:599 → 712
      DBC1; DBC1
      cl25352
      Location:1267 → 1338
      EFh_PEF; The penta-EF hand (PEF) family
      cl26511
      Location:771 → 1274
      Neuromodulin_N; Gap junction protein N-terminal region

    2. NM_001335170.1 → NP_001323719.1  ATP/GTP-binding protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0U1, A0A1P8AXY9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IS91.1

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