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    AT3G15290 3-hydroxyacyl-CoA dehydrogenase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820760, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G15290
    Gene description
    3-hydroxyacyl-CoA dehydrogenase family protein
    Primary source
    Araport:AT3G15290
    Locus tag
    AT3G15290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (5144938..5146860)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene VQ motif-containing protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Reumann S, et al. Plant Cell, 2007 Oct. PMID 17951448, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001338152.1
    NM_112392.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables NAD+ binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables enoyl-CoA hydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome HDA PubMed 

    General protein information

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    Preferred Names
    3-hydroxyacyl-CoA dehydrogenase family protein
    NP_188147.1
    • 3-hydroxyacyl-CoA dehydrogenase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: fatty acid metabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), 3-hydroxyacyl-CoA dehydrogenase, NAD binding (InterPro:IPR006176), 3-hydroxyacyl-CoA dehydrogenase, C-terminal (InterPro:IPR006108), 3-hydroxyacyl-CoA dehydrogenase, conserved site (InterPro:IPR006180), NAD(P)-binding domain (InterPro:IPR016040), 3-hydroxyacyl-CoA dehydrogenase (InterPro:IPR022694); BEST Arabidopsis thaliana protein match is: multifunctional protein 2 (TAIR:AT3G06860.1); Has 14531 Blast hits to 13544 proteins in 1840 species: Archae - 475; Bacteria - 9128; Metazoa - 588; Fungi - 237; Plants - 152; Viruses - 0; Other Eukaryotes - 3951 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5144938..5146860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112392.4 → NP_188147.1  3-hydroxyacyl-CoA dehydrogenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188147.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAP2, A0A384KN26, A0A654FH66, Q9LDF5
      Conserved Domains (1) summary
      PLN02545
      Location:1 → 294
      PLN02545; 3-hydroxybutyryl-CoA dehydrogenase

    2. NM_001338152.1 → NP_001327595.1  3-hydroxyacyl-CoA dehydrogenase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LST4, A0A5S9XCH3
    Nucleotide Protein
    Heading Accession and Version

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