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    AT3G11530 Vacuolar protein sorting 55 (VPS55) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820326, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G11530
    Gene description
    Vacuolar protein sorting 55 (VPS55) family protein
    Primary source
    Araport:AT3G11530
    Locus tag
    AT3G11530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (3628530..3630536, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Uncharacterized protein family (UPF0497)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337936.1
    NM_111986.3
    NM_202556.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Vacuolar protein sorting 55 (VPS55) family protein
    NP_566391.1
    • Vacuolar protein sorting 55 (VPS55) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT1G32410.5); Has 298 Blast hits to 298 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 139; Plants - 84; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
    NP_974285.2
    • Vacuolar protein sorting 55 (VPS55) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT1G32410.5); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3628530..3630536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202556.3 → NP_974285.2  Vacuolar protein sorting 55 (VPS55) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974285.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VIM1, A0A384KMM9, F4J6B8, Q93Z28
      Conserved Domains (1) summary
      pfam04133
      Location:1 → 112
      Vps55; Vacuolar protein sorting 55

    2. NM_001337936.1 → NP_001325456.1  Vacuolar protein sorting 55 (VPS55) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGR9, A0A1I9LLA6, A0A384LQK9
      Conserved Domains (1) summary
      pfam04133
      Location:1 → 91
      Vps55; Vacuolar protein sorting 55

    3. NM_111986.3 → NP_566391.1  Vacuolar protein sorting 55 (VPS55) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566391.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VIM1, A0A384KMM9, F4J6B8, Q93Z28
      Conserved Domains (1) summary
      pfam04133
      Location:1 → 112
      Vps55; Vacuolar protein sorting 55
    Nucleotide Protein
    Heading Accession and Version

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