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    AT3G02200 Proteasome component (PCI) domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821267, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT3G02200
    Gene description
    Proteasome component (PCI) domain protein
    Primary source
    Araport:AT3G02200
    Locus tag
    AT3G02200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1C9.1
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (406340..409200)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Bromodomain transcription factor Neighboring gene longifolia2 Neighboring gene SPIRAL1-like3 Neighboring gene Ribosomal protein L39 family protein Neighboring gene COBRA-like protein 1 precursor Neighboring gene small acidic-like protein Neighboring gene reversibly glycosylated polypeptide 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337385.1
    NM_111087.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Proteasome component (PCI) domain protein
    NP_001319448.1
    • Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT5G15610.1); Has 412 Blast hits to 412 proteins in 178 species: Archae - 0; Bacteria - 2; Metazoa - 180; Fungi - 112; Plants - 66; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
    NP_186869.2
    • Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT5G15610.2); Has 657 Blast hits to 657 proteins in 209 species: Archae - 0; Bacteria - 2; Metazoa - 271; Fungi - 161; Plants - 136; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      406340..409200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337385.1 → NP_001319448.1  Proteasome component (PCI) domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J2B4, Q9S7B6

    2. NM_111087.5 → NP_186869.2  Proteasome component (PCI) domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186869.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VHW5, A0A384KJ83, Q8W4A0, Q9S7B6
      Conserved Domains (2) summary
      pfam01399
      Location:258 → 359
      PCI; PCI domain
      pfam18005
      Location:363 → 391
      eIF3m_C_helix; eIF3 subunit M, C-terminal helix
    Nucleotide Protein
    Heading Accession and Version

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