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    Gtf3c3 general transcription factor IIIC, polypeptide 3 [ Mus musculus (house mouse) ]

    Gene ID: 98488, updated on 31-Jan-2019

    Summary

    Official Symbol
    Gtf3c3provided by MGI
    Official Full Name
    general transcription factor IIIC, polypeptide 3provided by MGI
    Primary source
    MGI:MGI:2138383
    See related
    Ensembl:ENSMUSG00000041303
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TFIIIC102; TF3C-gamma
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 7.2), CNS E18 (RPKM 5.0) and 25 other tissues See more
    Orthologs

    Genomic context

    See Gtf3c3 in Genome Data Viewer
    Location:
    1; 1 C1.1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (54395877..54439026, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (54454425..54495815, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 Neighboring gene microRNA 7681 Neighboring gene coiled-coil domain containing 150 Neighboring gene uncharacterized LOC108167366 Neighboring gene predicted gene, 34066

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    contributes_to RNA polymerase III general transcription initiation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    transcription by RNA polymerase III IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor TFIIIC complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription factor TFIIIC complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    general transcription factor 3C polypeptide 3
    Names
    TFIIIC 102 kDa subunit
    transcription factor IIIC-gamma subunit

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033194.3NP_001028366.1  general transcription factor 3C polypeptide 3

      See identical proteins and their annotated locations for NP_001028366.1

      Status: VALIDATED

      Source sequence(s)
      AC124538, BC141157, BY272879
      Consensus CDS
      CCDS14958.1
      UniProtKB/TrEMBL
      Q3TMP1
      Related
      ENSMUSP00000039420.6, ENSMUST00000041638.7
      Conserved Domains (3) summary
      sd00006
      Location:179207
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:212276
      TPR_11; TPR repeat
      pfam13432
      Location:421485
      TPR_16; Tetratricopeptide repeat

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      54395877..54439026 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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