Format

Send to:

Choose Destination
    • Showing Current items.

    Slc35f6 solute carrier family 35, member F6 [ Mus musculus (house mouse) ]

    Gene ID: 74919, updated on 31-Jan-2019

    Summary

    Official Symbol
    Slc35f6provided by MGI
    Official Full Name
    solute carrier family 35, member F6provided by MGI
    Primary source
    MGI:MGI:1922169
    See related
    Ensembl:ENSMUSG00000029175
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    P40; ANT2BP; Tango9; 4930471M23Rik; 5730478O19Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 21.2), adrenal adult (RPKM 19.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Slc35f6 in Genome Data Viewer
    Location:
    5; 5 B1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (30647939..30659729)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (30950312..30962102)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 40272 Neighboring gene predicted gene 9899 Neighboring gene potassium channel, subfamily K, member 3 Neighboring gene microRNA 5625 Neighboring gene centromere protein A Neighboring gene autophagy-related 3 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    lysosomal membrane ISO
    Inferred from Sequence Orthology
    more info
     
    lysosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    solute carrier family 35 member F6
    Names
    ANT2-binding protein
    transmembrane protein C2orf18 homolog
    transport and Golgi organization 9 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175675.3NP_783606.2  solute carrier family 35 member F6 precursor

      See identical proteins and their annotated locations for NP_783606.2

      Status: VALIDATED

      Source sequence(s)
      AK049408, AK051359, BY166812
      Consensus CDS
      CCDS19161.1
      UniProtKB/Swiss-Prot
      Q8VE96
      Related
      ENSMUSP00000058680.5, ENSMUST00000062962.11
      Conserved Domains (1) summary
      cl23754
      Location:105160
      EamA; EamA-like transporter family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      30647939..30659729
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321124.1XP_017176613.1  solute carrier family 35 member F6 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JEG3
      Related
      ENSMUSP00000142761.1, ENSMUST00000196740.4
    Support Center