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    Tdrp testis development related protein [ Mus musculus (house mouse) ]

    Gene ID: 72148, updated on 24-Aug-2021

    Summary

    Official Symbol
    Tdrpprovided by MGI
    Official Full Name
    testis development related proteinprovided by MGI
    Primary source
    MGI:MGI:1919398
    See related
    Ensembl:ENSMUSG00000050052
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610019F03Rik
    Expression
    Broad expression in testis adult (RPKM 15.0), genital fat pad adult (RPKM 14.6) and 20 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Tdrp in Genome Data Viewer
    Location:
    8; 8 A1.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (14002008..14025484, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (13952008..13975478, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (13952008..13974777, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene interferon induced transmembrane protein 1 pseudogene Neighboring gene F-box protein 25 Neighboring gene predicted gene 5907 Neighboring gene predicted gene, 53401 Neighboring gene glutamate rich 1 Neighboring gene uncharacterized LOC118567547

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in spermatogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within spermatogenesis ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    testis development-related protein
    Names
    immuno-moodulin

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001361625.1NP_001348554.1  testis development-related protein isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (a).
      Source sequence(s)
      AC139186
      Conserved Domains (1) summary
      pfam15683
      Location:45190
      TDRP; Testis development-related protein
    2. NM_001361628.1NP_001348557.1  testis development-related protein isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate in-frame splice junction in the 5' end compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform (a). Variants 2, 3, 4, and 5 all encode the same isoform (b).
      Source sequence(s)
      AC139186
      Consensus CDS
      CCDS22119.1
      Conserved Domains (1) summary
      pfam15683
      Location:38182
      TDRP; Testis development-related protein
    3. NM_001361629.1NP_001348558.1  testis development-related protein isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate in-frame splice junction in the 5' end compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform (a). Variants 2, 3, 4, and 5 all encode the same isoform (b).
      Source sequence(s)
      AC139186
      Consensus CDS
      CCDS22119.1
      Conserved Domains (1) summary
      pfam15683
      Location:38182
      TDRP; Testis development-related protein
    4. NM_001361630.1NP_001348559.1  testis development-related protein isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR and uses an alternate in-frame splice junction in the 5' end compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform (a). Variants 2, 3, 4, and 5 all encode the same isoform (b).
      Source sequence(s)
      AC139186, BY087244
      Consensus CDS
      CCDS22119.1
      Conserved Domains (1) summary
      pfam15683
      Location:38182
      TDRP; Testis development-related protein
    5. NM_173744.4NP_776105.1  testis development-related protein isoform b

      See identical proteins and their annotated locations for NP_776105.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate in-frame splice junction in the 5' end compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform (a). Variants 2, 3, 4, and 5 all encode the same isoform (b).
      Source sequence(s)
      AI506351, AI846549, AK166875
      Consensus CDS
      CCDS22119.1
      UniProtKB/Swiss-Prot
      Q8C5P7
      Related
      ENSMUSP00000058371.5, ENSMUST00000062613.12
      Conserved Domains (1) summary
      pfam15683
      Location:38182
      TDRP; Testis development-related protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      14002008..14025484 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011242083.4XP_011240385.1  testis development-related protein isoform X1

      Conserved Domains (1) summary
      pfam15683
      Location:109254
      TDRP; Testis development-related protein
    2. XM_011242084.2XP_011240386.1  testis development-related protein isoform X2

      See identical proteins and their annotated locations for XP_011240386.1

      Conserved Domains (1) summary
      pfam15683
      Location:57202
      TDRP; Testis development-related protein
    3. XM_011242085.4XP_011240387.1  testis development-related protein isoform X2

      See identical proteins and their annotated locations for XP_011240387.1

      Conserved Domains (1) summary
      pfam15683
      Location:57202
      TDRP; Testis development-related protein
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