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    Tdrp testis development related protein [ Mus musculus (house mouse) ]

    Gene ID: 72148, updated on 31-Jan-2019

    Summary

    Official Symbol
    Tdrpprovided by MGI
    Official Full Name
    testis development related proteinprovided by MGI
    Primary source
    MGI:MGI:1919398
    See related
    Ensembl:ENSMUSG00000050052
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610019F03Rik
    Expression
    Broad expression in testis adult (RPKM 15.0), genital fat pad adult (RPKM 14.6) and 20 other tissues See more
    Orthologs

    Genomic context

    See Tdrp in Genome Data Viewer
    Location:
    8; 8 A1.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (13952008..13975453, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (13952008..13974777, complement)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene interferon induced transmembrane protein 1 pseudogene Neighboring gene F-box protein 25 Neighboring gene uncharacterized LOC105243127 Neighboring gene predicted gene 5907 Neighboring gene predicted gene, 39134

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    spermatogenesis ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    testis development-related protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001361625.1NP_001348554.1  testis development-related protein isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (a).
      Source sequence(s)
      AC139186
      Conserved Domains (1) summary
      pfam15683
      Location:45190
      TDRP; Testis development-related protein
    2. NM_001361628.1NP_001348557.1  testis development-related protein isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate in-frame splice junction in the 5' end compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform (a). Variants 2, 3, 4, and 5 all encode the same isoform (b).
      Source sequence(s)
      AC139186
      Conserved Domains (1) summary
      pfam15683
      Location:38182
      TDRP; Testis development-related protein
    3. NM_001361629.1NP_001348558.1  testis development-related protein isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate in-frame splice junction in the 5' end compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform (a). Variants 2, 3, 4, and 5 all encode the same isoform (b).
      Source sequence(s)
      AC139186
      Conserved Domains (1) summary
      pfam15683
      Location:38182
      TDRP; Testis development-related protein
    4. NM_001361630.1NP_001348559.1  testis development-related protein isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR and uses an alternate in-frame splice junction in the 5' end compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform (a). Variants 2, 3, 4, and 5 all encode the same isoform (b).
      Source sequence(s)
      AC139186, BY087244
      Conserved Domains (1) summary
      pfam15683
      Location:38182
      TDRP; Testis development-related protein
    5. NM_173744.4NP_776105.1  testis development-related protein isoform b

      See identical proteins and their annotated locations for NP_776105.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate in-frame splice junction in the 5' end compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform (a). Variants 2, 3, 4, and 5 all encode the same isoform (b).
      Source sequence(s)
      AI506351, AI846549, AK166875
      Consensus CDS
      CCDS22119.1
      UniProtKB/Swiss-Prot
      Q8C5P7
      Related
      ENSMUSP00000058371.4, ENSMUST00000062613.11
      Conserved Domains (1) summary
      pfam15683
      Location:38182
      TDRP; Testis development-related protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      13952008..13975453 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508901.3XP_006508964.1  testis development-related protein isoform X3

    2. XM_011242083.2XP_011240385.1  testis development-related protein isoform X1

      Conserved Domains (1) summary
      pfam15683
      Location:109254
      TDRP; Testis development-related protein
    3. XM_006508900.3XP_006508963.1  testis development-related protein isoform X2

    4. XM_006508904.1XP_006508967.1  testis development-related protein isoform X5

      UniProtKB/Swiss-Prot
      Q8C5P7
      Conserved Domains (1) summary
      pfam15683
      Location:38182
      TDRP; Testis development-related protein
    5. XM_011242084.1XP_011240386.1  testis development-related protein isoform X4

      See identical proteins and their annotated locations for XP_011240386.1

      Conserved Domains (1) summary
      pfam15683
      Location:57202
      TDRP; Testis development-related protein
    6. XM_017312974.1XP_017168463.1  testis development-related protein isoform X5

      UniProtKB/Swiss-Prot
      Q8C5P7
      Conserved Domains (1) summary
      pfam15683
      Location:38182
      TDRP; Testis development-related protein
    7. XM_011242085.2XP_011240387.1  testis development-related protein isoform X4

      See identical proteins and their annotated locations for XP_011240387.1

      Conserved Domains (1) summary
      pfam15683
      Location:57202
      TDRP; Testis development-related protein
    8. XM_006508905.2XP_006508968.1  testis development-related protein isoform X6

      Conserved Domains (1) summary
      pfam15683
      Location:12131
      TDRP; Testis development-related protein
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