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    Ankrd40 ankyrin repeat domain 40 [ Mus musculus (house mouse) ]

    Gene ID: 71452, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ankrd40provided by MGI
    Official Full Name
    ankyrin repeat domain 40provided by MGI
    Primary source
    MGI:MGI:1918702
    See related
    Ensembl:ENSMUSG00000020864
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gcap15; 1110011C06Rik; 5530600A18Rik
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 37.5), lung adult (RPKM 34.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ankrd40 in Genome Data Viewer
    Location:
    11; 11 D
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (94328001..94341847)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (94189315..94203161)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 21885 Neighboring gene LUC7-like 3 (S. cerevisiae) Neighboring gene ATP-binding cassette, sub-family C (CFTR/MRP), member 3 Neighboring gene calcium channel, voltage-dependent, T type, alpha 1G subunit

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • MGC29030

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein 40
    Names
    granule cell antiserum positive 15

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027799.2NP_082075.2  ankyrin repeat domain-containing protein 40 isoform 1

      See identical proteins and their annotated locations for NP_082075.2

      Status: VALIDATED

      Source sequence(s)
      AL645965
      Consensus CDS
      CCDS25253.2
      UniProtKB/Swiss-Prot
      Q5SUE8
      Related
      ENSMUSP00000103448.2, ENSMUST00000107818.8
      Conserved Domains (4) summary
      cd00204
      Location:1493
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:4893
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:1464
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:1440
      ANK; ANK repeat [structural motif]
    2. NM_146024.1NP_666136.1  ankyrin repeat domain-containing protein 40 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK017451, AL645965, CN835214
      Consensus CDS
      CCDS36283.1
      UniProtKB/Swiss-Prot
      Q5SUE8
      Related
      ENSMUSP00000021227.5, ENSMUST00000021227.5
      Conserved Domains (4) summary
      cd00204
      Location:1493
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:4893
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:1464
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:1440
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      94328001..94341847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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