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ANKRD40 ankyrin repeat domain 40 [ Homo sapiens (human) ]

Gene ID: 91369, updated on 18-Aug-2020

Summary

Official Symbol
ANKRD40provided by HGNC
Official Full Name
ankyrin repeat domain 40provided by HGNC
Primary source
HGNC:HGNC:28233
See related
Ensembl:ENSG00000154945
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in fat (RPKM 27.4), brain (RPKM 23.1) and 25 other tissues See more
Orthologs

Genomic context

See ANKRD40 in Genome Data Viewer
Location:
17q21.33
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (50693195..50707914, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (48770551..48785270, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel subunit alpha1 G Neighboring gene uncharacterized LOC101927253 Neighboring gene ATP binding cassette subfamily C member 3 Neighboring gene ABCC3 (B) eExon liver enhancer Neighboring gene LUC7 like 3 pre-mRNA splicing factor Neighboring gene ANKRD40 C-terminal like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC15396, DKFZp451K241

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
ankyrin repeat domain-containing protein 40

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_052855.4NP_443087.1  ankyrin repeat domain-containing protein 40

    See identical proteins and their annotated locations for NP_443087.1

    Status: VALIDATED

    Source sequence(s)
    AC005921, BC012978
    Consensus CDS
    CCDS11572.1
    UniProtKB/Swiss-Prot
    Q6AI12
    UniProtKB/TrEMBL
    A8IK34
    Related
    ENSP00000285243.6, ENST00000285243.7
    Conserved Domains (4) summary
    cd00204
    Location:1493
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:4893
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:1464
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:1440
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    50693195..50707914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017025296.1XP_016880785.1  ankyrin repeat domain-containing protein 40 isoform X1

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