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    Ebna1bp2 EBNA1 binding protein 2 [ Mus musculus (house mouse) ]

    Gene ID: 69072, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ebna1bp2provided by MGI
    Official Full Name
    EBNA1 binding protein 2provided by MGI
    Primary source
    MGI:MGI:1916322
    See related
    Ensembl:ENSMUSG00000028729
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    p40; Ebp2; Nobp; C81321; AA537058; 1810014B19Rik; B830003A16Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 26.4), liver E14 (RPKM 18.1) and 25 other tissues See more
    Orthologs

    Genomic context

    See Ebna1bp2 in Genome Data Viewer
    Location:
    4; 4 D2.1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (118620799..118627776)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (118293404..118300381)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 40237 Neighboring gene cilia and flagella associated protein 57 Neighboring gene DNA segment, Chr 4, ERATO Doi 617, expressed Neighboring gene predicted gene 12853 Neighboring gene olfactory receptor 62

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    rRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ribosomal large subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nuclear periphery IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    probable rRNA-processing protein EBP2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026932.4NP_081208.1  probable rRNA-processing protein EBP2

      See identical proteins and their annotated locations for NP_081208.1

      Status: VALIDATED

      Source sequence(s)
      AK007491, AL669952, BY324791
      Consensus CDS
      CCDS18555.1
      UniProtKB/Swiss-Prot
      Q9D903
      Related
      ENSMUSP00000030501.8, ENSMUST00000030501.14
      Conserved Domains (1) summary
      pfam05890
      Location:20295
      Ebp2; Eukaryotic rRNA processing protein EBP2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      118620799..118627776
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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