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    Ebna1bp2 EBNA1 binding protein 2 [ Mus musculus (house mouse) ]

    Gene ID: 69072, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ebna1bp2provided by MGI
    Official Full Name
    EBNA1 binding protein 2provided by MGI
    Primary source
    MGI:MGI:1916322
    See related
    Ensembl:ENSMUSG00000028729
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    N; p4; Ebp; p40; Ebp2; Nobp; C81321; AA537058; 1810014B19Rik; B830003A16Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 26.4), liver E14 (RPKM 18.1) and 25 other tissues See more
    Orthologs
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    Genomic context

    See Ebna1bp2 in Genome Data Viewer
    Location:
    4; 4 D2.1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (118477996..118484973)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (118620799..118627776)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (118293404..118300381)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40237 Neighboring gene cilia and flagella associated protein 57 Neighboring gene predicted gene, 52677 Neighboring gene DNA segment, Chr 4, ERATO Doi 617, expressed Neighboring gene predicted gene 12853 Neighboring gene olfactory receptor 62

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in rRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in ribosomal large subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nuclear periphery IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    probable rRNA-processing protein EBP2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026932.4NP_081208.1  probable rRNA-processing protein EBP2

      See identical proteins and their annotated locations for NP_081208.1

      Status: VALIDATED

      Source sequence(s)
      AK007491, AL669952, BY324791
      Consensus CDS
      CCDS18555.1
      UniProtKB/Swiss-Prot
      Q9D903
      Related
      ENSMUSP00000030501.9, ENSMUST00000030501.15
      Conserved Domains (1) summary
      pfam05890
      Location:20295
      Ebp2; Eukaryotic rRNA processing protein EBP2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      118477996..118484973
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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