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    Ngdn neuroguidin, EIF4E binding protein [ Mus musculus (house mouse) ]

    Gene ID: 68966, updated on 23-May-2018

    Summary

    Official Symbol
    Ngdnprovided by MGI
    Official Full Name
    neuroguidin, EIF4E binding proteinprovided by MGI
    Primary source
    MGI:MGI:1916216
    See related
    Ensembl:ENSMUSG00000022204
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ngd; neuroguidin; 1500001L15Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 21.1), placenta adult (RPKM 21.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ngdn in Genome Data Viewer
    Location:
    14; 14 C3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (55015454..55024138)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (55634291..55642975)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene myosin heavy chain associated RNA transcript Neighboring gene predicted gene, 31251 Neighboring gene microRNA 208b Neighboring gene myosin, heavy polypeptide 7, cardiac muscle, beta Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene 20687 Neighboring gene zinc finger homeobox 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Transgenic (1) 
    • Targeted (2) 

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    neuroguidin
    Names
    EIF4E-binding protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026890.2NP_081166.1  neuroguidin

      See identical proteins and their annotated locations for NP_081166.1

      Status: VALIDATED

      Source sequence(s)
      AK005098, BC052790, CN715203
      Consensus CDS
      CCDS36928.1
      UniProtKB/Swiss-Prot
      Q9DB96
      Related
      ENSMUSP00000022815.8, ENSMUST00000022815.9
      Conserved Domains (1) summary
      pfam04000
      Location:1897
      Sas10_Utp3; Sas10/Utp3/C1D family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      55015454..55024138
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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