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    4833420G17Rik RIKEN cDNA 4833420G17 gene [ Mus musculus (house mouse) ]

    Gene ID: 67392, updated on 31-Jan-2019

    Summary

    Official Symbol
    4833420G17Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4833420G17 geneprovided by MGI
    Primary source
    MGI:MGI:1914642
    See related
    Ensembl:ENSMUSG00000062822
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C85193; AW107518; 2210017J06Rik; 5730533D17Rik
    Expression
    Ubiquitous expression in CNS E14 (RPKM 19.2), whole brain E14.5 (RPKM 16.3) and 25 other tissues See more
    Orthologs

    Genomic context

    See 4833420G17Rik in Genome Data Viewer
    Location:
    13; 13 D2.3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (119462015..119486120)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (120251566..120274924)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene nicotinamide nucleotide transhydrogenase Neighboring gene polyadenylate binding protein-interacting protein 1 Neighboring gene RIKEN cDNA 3110070M22 gene Neighboring gene transmembrane protein 267 Neighboring gene chemokine (C-C motif) ligand 28

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C5orf34 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113550.1NP_001107022.1  uncharacterized protein C5orf34 homolog

      See identical proteins and their annotated locations for NP_001107022.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate internal 5' UTR segment, as compared to variant 1.
      Source sequence(s)
      AK008565, AK146515
      Consensus CDS
      CCDS49373.1
      UniProtKB/Swiss-Prot
      Q3UJC8
      Related
      ENSMUSP00000026519.8, ENSMUST00000026519.9
      Conserved Domains (2) summary
      pfam15016
      Location:455541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9153
      DUF4524; Domain of unknown function (DUF4524)
    2. NM_001360805.1NP_001347734.1  uncharacterized protein C5orf34 homolog

      Status: VALIDATED

      Source sequence(s)
      AC163689
      Conserved Domains (2) summary
      pfam15016
      Location:455541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9153
      DUF4524; Domain of unknown function (DUF4524)
    3. NM_026127.4NP_080403.4  uncharacterized protein C5orf34 homolog

      See identical proteins and their annotated locations for NP_080403.4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK008565, AK146515, BC030738, CK389219
      Consensus CDS
      CCDS49373.1
      UniProtKB/Swiss-Prot
      Q3UJC8
      Related
      ENSMUSP00000153079.1, ENSMUST00000225186.1
      Conserved Domains (2) summary
      pfam15016
      Location:455541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9153
      DUF4524; Domain of unknown function (DUF4524)

    RNA

    1. NR_153825.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC163689

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      119462015..119486120
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006517749.1XP_006517812.1  uncharacterized protein C5orf34 homolog isoform X2

      Conserved Domains (2) summary
      pfam15016
      Location:455526
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9153
      DUF4524; Domain of unknown function (DUF4524)
    2. XM_006517747.1XP_006517810.1  uncharacterized protein C5orf34 homolog isoform X1

      See identical proteins and their annotated locations for XP_006517810.1

      UniProtKB/Swiss-Prot
      Q3UJC8
      Conserved Domains (2) summary
      pfam15016
      Location:455541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9153
      DUF4524; Domain of unknown function (DUF4524)
    3. XM_006517743.1XP_006517806.1  uncharacterized protein C5orf34 homolog isoform X1

      See identical proteins and their annotated locations for XP_006517806.1

      UniProtKB/Swiss-Prot
      Q3UJC8
      Conserved Domains (2) summary
      pfam15016
      Location:455541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9153
      DUF4524; Domain of unknown function (DUF4524)
    4. XM_006517748.1XP_006517811.1  uncharacterized protein C5orf34 homolog isoform X1

      See identical proteins and their annotated locations for XP_006517811.1

      UniProtKB/Swiss-Prot
      Q3UJC8
      Conserved Domains (2) summary
      pfam15016
      Location:455541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9153
      DUF4524; Domain of unknown function (DUF4524)
    5. XM_006517744.1XP_006517807.1  uncharacterized protein C5orf34 homolog isoform X1

      See identical proteins and their annotated locations for XP_006517807.1

      UniProtKB/Swiss-Prot
      Q3UJC8
      Conserved Domains (2) summary
      pfam15016
      Location:455541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9153
      DUF4524; Domain of unknown function (DUF4524)
    6. XM_006517745.1XP_006517808.1  uncharacterized protein C5orf34 homolog isoform X1

      See identical proteins and their annotated locations for XP_006517808.1

      UniProtKB/Swiss-Prot
      Q3UJC8
      Conserved Domains (2) summary
      pfam15016
      Location:455541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9153
      DUF4524; Domain of unknown function (DUF4524)
    7. XM_017315575.1XP_017171064.1  uncharacterized protein C5orf34 homolog isoform X3

      Conserved Domains (2) summary
      pfam15016
      Location:338424
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:436
      DUF4524; Domain of unknown function (DUF4524)
    8. XM_006517746.1XP_006517809.1  uncharacterized protein C5orf34 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q3UJC8
      Conserved Domains (2) summary
      pfam15016
      Location:455541
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:9153
      DUF4524; Domain of unknown function (DUF4524)
    9. XM_006517750.1XP_006517813.1  uncharacterized protein C5orf34 homolog isoform X3

      Conserved Domains (2) summary
      pfam15016
      Location:338424
      DUF4520; Domain of unknown function (DUF4520)
      pfam15025
      Location:436
      DUF4524; Domain of unknown function (DUF4524)

    RNA

    1. XR_382741.1 RNA Sequence

    2. XR_873788.2 RNA Sequence

    3. XR_001780802.1 RNA Sequence

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