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C5orf34 chromosome 5 open reading frame 34 [ Homo sapiens (human) ]

Gene ID: 375444, updated on 18-Aug-2020

Summary

Official Symbol
C5orf34provided by HGNC
Official Full Name
chromosome 5 open reading frame 34provided by HGNC
Primary source
HGNC:HGNC:24738
See related
Ensembl:ENSG00000172244
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.9), lymph node (RPKM 1.1) and 23 other tissues See more
Orthologs

Genomic context

See C5orf34 in Genome Data Viewer
Location:
5p12
Exon count:
13
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (43486699..43515433, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (43486803..43515273, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene C-C motif chemokine ligand 28 Neighboring gene transmembrane protein 267 Neighboring gene C5orf34 antisense RNA 1 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 19 Neighboring gene poly(A) binding protein interacting protein 1 Neighboring gene NNT antisense RNA 1 Neighboring gene adenosylmethionine decarboxylase 1 pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • FLJ32363, MGC46448

General protein information

Preferred Names
uncharacterized protein C5orf34

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198566.4NP_940968.1  uncharacterized protein C5orf34

    See identical proteins and their annotated locations for NP_940968.1

    Status: VALIDATED

    Source sequence(s)
    AK056925, BC036867, DB453004
    Consensus CDS
    CCDS3946.1
    UniProtKB/Swiss-Prot
    Q96MH7
    Related
    ENSP00000303490.2, ENST00000306862.7
    Conserved Domains (2) summary
    pfam15016
    Location:451538
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:7151
    DUF4524; Domain of unknown function (DUF4524)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    43486699..43515433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017009446.1XP_016864935.1  uncharacterized protein C5orf34 isoform X2

  2. XM_017009445.1XP_016864934.1  uncharacterized protein C5orf34 isoform X2

  3. XM_011514038.3XP_011512340.1  uncharacterized protein C5orf34 isoform X1

    Conserved Domains (2) summary
    pfam15016
    Location:451538
    DUF4520; Domain of unknown function (DUF4520)
    pfam15025
    Location:7151
    DUF4524; Domain of unknown function (DUF4524)

RNA

  1. XR_001742063.2 RNA Sequence

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