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    Rab5if RAB5 interacting factor [ Mus musculus (house mouse) ]

    Gene ID: 67388, updated on 31-Jan-2019

    Summary

    Official Symbol
    Rab5ifprovided by MGI
    Official Full Name
    RAB5 interacting factorprovided by MGI
    Primary source
    MGI:MGI:1914638
    See related
    Ensembl:ENSMUSG00000027637
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    RIP5; AI316789; 1110008F13Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 124.4), ovary adult (RPKM 75.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rab5if in Genome Data Viewer
    Location:
    2; 2 H1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (156863122..156873563)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (156688858..156699299)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene 14230 Neighboring gene TGFB-induced factor homeobox 2 Neighboring gene RIKEN cDNA 5430405H02 gene Neighboring gene Src-like-adaptor 2 Neighboring gene NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 pseudogene Neighboring gene N-myc downstream regulated gene 3 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    mitochondrion HDA PubMed 

    General protein information

    Preferred Names
    uncharacterized protein RAB5IF homolog
    Names
    novel transcript
    rab5-interacting protein
    uncharacterized protein C20orf24 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026124.3NP_080400.1  uncharacterized protein RAB5IF homolog

      See identical proteins and their annotated locations for NP_080400.1

      Status: VALIDATED

      Source sequence(s)
      AK003568, AW493966, BY165552
      Consensus CDS
      CCDS16970.1
      UniProtKB/Swiss-Prot
      Q9CQT9
      Related
      ENSMUSP00000029165.3, ENSMUST00000029165.3
      Conserved Domains (1) summary
      pfam07019
      Location:44120
      Rab5ip; Rab5-interacting protein (Rab5ip)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      156863122..156873563
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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