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    Pacrgl PARK2 co-regulated-like [ Mus musculus (house mouse) ]

    Gene ID: 66768, updated on 16-Nov-2018

    Summary

    Official Symbol
    Pacrglprovided by MGI
    Official Full Name
    PARK2 co-regulated-likeprovided by MGI
    Primary source
    MGI:MGI:1914018
    See related
    Ensembl:ENSMUSG00000029089 Vega:OTTMUSG00000042186
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933428G09Rik
    Expression
    Broad expression in testis adult (RPKM 12.7), CNS E11.5 (RPKM 4.1) and 21 other tissues See more
    Orthologs

    Genomic context

    See Pacrgl in Genome Data Viewer
    Location:
    5; 5 B3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (48372335..48388845)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (48763631..48779995)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene calmodulin 2 pseudogene Neighboring gene slit guidance ligand 2 Neighboring gene microRNA 218-1 Neighboring gene RIKEN cDNA 5730480H06 gene Neighboring gene Kv channel interacting protein 4 Neighboring gene dyskeratosis congenita 1, dyskerin homolog pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025755.3NP_080031.1  PACRG-like protein

      See identical proteins and their annotated locations for NP_080031.1

      Status: PROVISIONAL

      Source sequence(s)
      AC101004
      Consensus CDS
      CCDS19281.1
      UniProtKB/Swiss-Prot
      Q9D3X5
      Related
      ENSMUSP00000030968.2, OTTMUSP00000071506, ENSMUST00000030968.6, OTTMUST00000134938
      Conserved Domains (1) summary
      pfam10274
      Location:78245
      ParcG; Parkin co-regulated protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      48372335..48388845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321071.1XP_017176560.1  PACRG-like protein isoform X3

    2. XM_017321068.1XP_017176557.1  PACRG-like protein isoform X1

    3. XM_017321069.1XP_017176558.1  PACRG-like protein isoform X1

    4. XM_017321070.1XP_017176559.1  PACRG-like protein isoform X2

    5. XM_017321072.1XP_017176561.1  PACRG-like protein isoform X4

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