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    Susd3 sushi domain containing 3 [ Mus musculus (house mouse) ]

    Gene ID: 66329, updated on 13-Feb-2018

    Summary

    Official Symbol
    Susd3provided by MGI
    Official Full Name
    sushi domain containing 3provided by MGI
    Primary source
    MGI:MGI:1913579
    See related
    Ensembl:ENSMUSG00000021384 Vega:OTTMUSG00000027688
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700017I11Rik; 2810440J20Rik
    Expression
    Biased expression in ovary adult (RPKM 50.4), adrenal adult (RPKM 21.7) and 5 other tissues See more
    Orthologs

    Genomic context

    See Susd3 in Genome Data Viewer
    Location:
    13; 13 A5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (49230689..49248706, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (49326202..49343532, complement)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene ninjurin 1 Neighboring gene caspase recruitment domain family, member 19 Neighboring gene FYVE, RhoGEF and PH domain containing 3 Neighboring gene BICD cargo adaptor 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    sushi domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360772.1NP_001347701.1  sushi domain-containing protein 3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC140284
    2. NM_025491.4NP_079767.2  sushi domain-containing protein 3 isoform 1

      See identical proteins and their annotated locations for NP_079767.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AC140284
      Consensus CDS
      CCDS26498.1
      UniProtKB/Swiss-Prot
      Q9D176
      Related
      ENSMUSP00000061423.6, OTTMUSP00000034655, ENSMUST00000058196.12
      Conserved Domains (1) summary
      cd00033
      Location:3292
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    3. NM_028340.2NP_082616.1  sushi domain-containing protein 3 isoform 2

      See identical proteins and their annotated locations for NP_082616.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and 5' coding region compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
      Source sequence(s)
      BC045525, BU840436
      Consensus CDS
      CCDS56880.1
      UniProtKB/Swiss-Prot
      Q9D176
      Related
      ENSMUSP00000021816.5, OTTMUSP00000034656, ENSMUST00000021816.11
      Conserved Domains (1) summary
      cd00033
      Location:2080
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      49230689..49248706 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516941.3XP_006517004.1  sushi domain-containing protein 3 isoform X2

    2. XM_006516940.3XP_006517003.1  sushi domain-containing protein 3 isoform X1

      Conserved Domains (1) summary
      cd00033
      Location:41101
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
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