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    Pno1 partner of NOB1 homolog [ Mus musculus (house mouse) ]

    Gene ID: 66249, updated on 5-Aug-2018

    Summary

    Official Symbol
    Pno1provided by MGI
    Official Full Name
    partner of NOB1 homologprovided by MGI
    Primary source
    MGI:MGI:1913499
    See related
    Ensembl:ENSMUSG00000020116 Vega:OTTMUSG00000005193
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Emi3; Imi3; AA407421; AU015468; AU019495; AU042323; 1810003N24Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 11.8), CNS E11.5 (RPKM 8.6) and 27 other tissues See more
    Orthologs

    Genomic context

    See Pno1 in Genome Data Viewer
    Location:
    11; 11 A2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (17203198..17211589, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (17103201..17111592, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L39 pseudogene Neighboring gene protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I) Neighboring gene WD repeat domain 92 Neighboring gene C1D nuclear receptor co-repressor

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    RNA-binding protein PNO1
    Names
    expressed during mesenchymal induction 3
    induced during mesenchymal induction 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025443.2NP_079719.1  RNA-binding protein PNO1

      See identical proteins and their annotated locations for NP_079719.1

      Status: VALIDATED

      Source sequence(s)
      AI837771, AK007324, BY034432
      Consensus CDS
      CCDS24449.1
      UniProtKB/Swiss-Prot
      Q9CPS7
      Related
      ENSMUSP00000020317.7, OTTMUSP00000005395, ENSMUST00000020317.7, OTTMUST00000011607
      Conserved Domains (2) summary
      smart00322
      Location:173225
      KH; K homology RNA-binding domain
      COG1094
      Location:68243
      Krr1; rRNA processing protein Krr1/Pno1, contains KH domain [Translation, ribosomal structure and biogenesis]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      17203198..17211589 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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