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    Commd4 COMM domain containing 4 [ Mus musculus (house mouse) ]

    Gene ID: 66199, updated on 31-Jan-2019

    Summary

    Official Symbol
    Commd4provided by MGI
    Official Full Name
    COMM domain containing 4provided by MGI
    Primary source
    MGI:MGI:1913449
    See related
    Ensembl:ENSMUSG00000032299
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110039H05Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 54.1), placenta adult (RPKM 51.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Commd4 in Genome Data Viewer
    Location:
    9; 9 B
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (57155035..57158349, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (57002848..57006106, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene mannosidase, alpha, class 2C, member 1, opposite strand Neighboring gene mannosidase, alpha, class 2C, member 1 Neighboring gene nei endonuclease VIII-like 1 (E. coli) Neighboring gene RIKEN cDNA 1700041C23 gene Neighboring gene predicted gene, 46115

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    COMM domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025417.2NP_079693.1  COMM domain-containing protein 4

      See identical proteins and their annotated locations for NP_079693.1

      Status: PROVISIONAL

      Source sequence(s)
      AK004174
      Consensus CDS
      CCDS40647.1
      UniProtKB/Swiss-Prot
      Q9CQ02
      Related
      ENSMUSP00000069078.7, ENSMUST00000065358.8
      Conserved Domains (1) summary
      cd04752
      Location:25198
      Commd4; COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      57155035..57158349 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511343.2XP_006511406.1  COMM domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_006511406.1

      Related
      ENSMUSP00000151102.1, ENSMUST00000214640.1
      Conserved Domains (1) summary
      cl06336
      Location:26176
      Commd; COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene MURR1 product, and related proteins. Presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in ...

    RNA

    1. XR_379435.2 RNA Sequence

    2. XR_379436.3 RNA Sequence

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