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    Nsa2 NSA2 ribosome biogenesis homolog [ Mus musculus (house mouse) ]

    Gene ID: 59050, updated on 23-Jun-2021

    Summary

    Official Symbol
    Nsa2provided by MGI
    Official Full Name
    NSA2 ribosome biogenesis homologprovided by MGI
    Primary source
    MGI:MGI:1913883
    See related
    Ensembl:ENSMUSG00000060739
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    N; LN; Yr2; Yr29; LNR42; Nsa2p; Tinp1; 5730427N09Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 31.3), bladder adult (RPKM 26.9) and 24 other tissues See more
    Orthologs
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    Genomic context

    See Nsa2 in Genome Data Viewer
    Location:
    13; 13 D1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (97265935..97274434, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (97129427..97137926, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (97899382..97907881, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700029F12 gene Neighboring gene predicted gene, 41028 Neighboring gene family with sequence similarity 169, member A Neighboring gene proteolipid protein 2 pseudogene Neighboring gene G elongation factor, mitochondrial 2 Neighboring gene hexosaminidase B Neighboring gene ectodermal-neural cortex 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC118054

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in maturation of 5.8S rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in maturation of LSU-rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within rRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    ribosome biogenesis protein NSA2 homolog
    Names
    L-name related protein
    L-name-related protein 42
    TGF-beta-inducible nuclear protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021552.5NP_067527.3  ribosome biogenesis protein NSA2 homolog

      See identical proteins and their annotated locations for NP_067527.3

      Status: VALIDATED

      Source sequence(s)
      AC154620, AK078457, CJ132894
      Consensus CDS
      CCDS36756.1
      UniProtKB/Swiss-Prot
      Q9CR47
      Related
      ENSMUSP00000073161.8, ENSMUST00000073456.9
      Conserved Domains (1) summary
      cd11381
      Location:4260
      NSA2; pre-ribosomal protein NSA2 (Nop seven-associated 2)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      97265935..97274434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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