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    Ncoa6 nuclear receptor coactivator 6 [ Mus musculus (house mouse) ]

    Gene ID: 56406, updated on 2-Oct-2018

    Summary

    Official Symbol
    Ncoa6provided by MGI
    Official Full Name
    nuclear receptor coactivator 6provided by MGI
    Primary source
    MGI:MGI:1929915
    See related
    Ensembl:ENSMUSG00000038369 Vega:OTTMUSG00000016062
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NRC; AIB3; ASC2; PRIP; ASC-2; Ncoa7; RAP250; mKIAA0181
    Expression
    Ubiquitous expression in testis adult (RPKM 15.8), whole brain E14.5 (RPKM 15.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ncoa6 in Genome Data Viewer
    Location:
    2; 2 H1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (155390656..155473894, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (155216401..155266519, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class U Neighboring gene microRNA 695 Neighboring gene transformation related protein 53 inducible nuclear protein 2 Neighboring gene ribosomal protein L8 pseudogene Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 pseudogene Neighboring gene cytochrome c, somatic pseudogene Neighboring gene gamma-glutamyltransferase 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (8)  1 citation
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC90663

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    chromatin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nuclear receptor transcription coactivator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    transcription coactivator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    brain development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cellular response to DNA damage stimulus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    heart development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    histone H3-K4 trimethylation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    histone H3-K4 trimethylation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    labyrinthine layer blood vessel development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of transcription, DNA-templated IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    histone methyltransferase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    histone methyltransferase complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    transcription factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription factor complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    nuclear receptor coactivator 6
    Names
    PPAR interacting protein PRIP
    PPAR-interacting protein
    activating signal cointegrator 2
    amplified in breast cancer protein 3
    cancer-amplified transcriptional coactivator ASC-2
    nuclear receptor coactivator RAP250
    nuclear receptor-activating protein 250
    nuclear receptor-activating protein, 250 kDa
    peroxisome proliferator-activated receptor interacting protein,PRIP
    peroxisome proliferator-activated receptor-interacting protein
    thyroid hormone receptor binding protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001242558.1NP_001229487.1  nuclear receptor coactivator 6 isoform 2

      See identical proteins and their annotated locations for NP_001229487.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an in-frame coding exon compared to variant 1. This results in a shorter isoform (2, also known as Ncoa6-beta) missing an internal protein segment compared to isoform 1.
      Source sequence(s)
      BC083187, CJ056778, JF707634
      UniProtKB/TrEMBL
      F6M2J9, Q5XJV5
      Conserved Domains (2) summary
      pfam09606
      Location:398809
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam13820
      Location:48190
      Nucleic_acid_bd; Putative nucleic acid-binding region
    2. NM_019825.3NP_062799.2  nuclear receptor coactivator 6 isoform 1

      See identical proteins and their annotated locations for NP_062799.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1, also known as Ncoa6-alpha)
      Source sequence(s)
      BC083187, CJ056778
      Consensus CDS
      CCDS38295.1
      UniProtKB/TrEMBL
      Q5XJV5
      Related
      ENSMUSP00000045386.5, ENSMUST00000043126.11
      Conserved Domains (2) summary
      pfam09606
      Location:428862
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam13820
      Location:48190
      Nucleic_acid_bd; Putative nucleic acid-binding region

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      155390656..155473894 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239709.1XP_011238011.1  nuclear receptor coactivator 6 isoform X2

      See identical proteins and their annotated locations for XP_011238011.1

      UniProtKB/TrEMBL
      F6M2J9
      Conserved Domains (2) summary
      pfam09606
      Location:398809
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam13820
      Location:48190
      Nucleic_acid_bd; Putative nucleic acid-binding region
    2. XM_006499927.1XP_006499990.1  nuclear receptor coactivator 6 isoform X1

      See identical proteins and their annotated locations for XP_006499990.1

      UniProtKB/TrEMBL
      Q5XJV5
      Conserved Domains (2) summary
      pfam09606
      Location:428862
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam13820
      Location:48190
      Nucleic_acid_bd; Putative nucleic acid-binding region
    3. XM_006499928.2XP_006499991.1  nuclear receptor coactivator 6 isoform X1

      See identical proteins and their annotated locations for XP_006499991.1

      UniProtKB/TrEMBL
      Q5XJV5
      Related
      ENSMUSP00000105295.1, OTTMUSP00000017183, ENSMUST00000109670.7, OTTMUST00000038342
      Conserved Domains (2) summary
      pfam09606
      Location:428862
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam13820
      Location:48190
      Nucleic_acid_bd; Putative nucleic acid-binding region
    4. XM_011239708.2XP_011238010.1  nuclear receptor coactivator 6 isoform X1

      See identical proteins and their annotated locations for XP_011238010.1

      UniProtKB/TrEMBL
      Q5XJV5
      Conserved Domains (2) summary
      pfam09606
      Location:428862
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam13820
      Location:48190
      Nucleic_acid_bd; Putative nucleic acid-binding region
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