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    Golga4 golgi autoantigen, golgin subfamily a, 4 [ Mus musculus (house mouse) ]

    Gene ID: 54214, updated on 5-Aug-2018

    Summary

    Official Symbol
    Golga4provided by MGI
    Official Full Name
    golgi autoantigen, golgin subfamily a, 4provided by MGI
    Primary source
    MGI:MGI:1859646
    See related
    Ensembl:ENSMUSG00000038708 Vega:OTTMUSG00000061786
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Olp-1; AI225887; AU019508
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 6.1), placenta adult (RPKM 5.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Golga4 in Genome Data Viewer
    Location:
    9; 9 F3
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (118506192..118582519)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (118415436..118491637)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 33408 Neighboring gene predicted gene, 33460 Neighboring gene eomesodermin Neighboring gene family with sequence similarity 64, member A pseudogene Neighboring gene integrin alpha 9 Neighboring gene predicted gene 10157 Neighboring gene predicted gene, 39454

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    GTPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    Golgi to plasma membrane protein transport ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of axon extension ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    golgin subfamily A member 4
    Names
    golgin-245
    tGolgin-1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_018748.3NP_061218.2  golgin subfamily A member 4

      See identical proteins and their annotated locations for NP_061218.2

      Status: PROVISIONAL

      Source sequence(s)
      AC173340, CT486004
      Consensus CDS
      CCDS40801.1
      UniProtKB/Swiss-Prot
      Q91VW5
      Related
      ENSMUSP00000081880.4, OTTMUSP00000078173, ENSMUST00000084820.5, OTTMUST00000150759
      Conserved Domains (5) summary
      pfam05483
      Location:4921191
      SCP-1; Synaptonemal complex protein 1 (SCP-1)
      smart00755
      Location:21822225
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:14612148
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:8801707
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cl19219
      Location:880956
      DUF342; Protein of unknown function (DUF342)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      118506192..118582519
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006512187.3XP_006512250.1  golgin subfamily A member 4 isoform X1

      See identical proteins and their annotated locations for XP_006512250.1

      Conserved Domains (4) summary
      smart00755
      Location:22152258
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:1901039
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam01576
      Location:6311740
      Myosin_tail_1; Myosin tail
      cl19219
      Location:913989
      DUF342; Protein of unknown function (DUF342)
    2. XM_006512189.3XP_006512252.1  golgin subfamily A member 4 isoform X3

      Conserved Domains (4) summary
      smart00755
      Location:22152258
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:1901039
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam01576
      Location:6311740
      Myosin_tail_1; Myosin tail
      cl19219
      Location:913989
      DUF342; Protein of unknown function (DUF342)
    3. XM_017313473.1XP_017168962.1  golgin subfamily A member 4 isoform X2

      Conserved Domains (4) summary
      smart00755
      Location:22142257
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:1901038
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam01576
      Location:6301739
      Myosin_tail_1; Myosin tail
      cl19219
      Location:912988
      DUF342; Protein of unknown function (DUF342)
    4. XM_017313474.1XP_017168963.1  golgin subfamily A member 4 isoform X4

      Conserved Domains (5) summary
      smart00755
      Location:21872230
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:14662153
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:197987
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01576
      Location:6031712
      Myosin_tail_1; Myosin tail
      cl19219
      Location:885961
      DUF342; Protein of unknown function (DUF342)
    5. XM_017313475.1XP_017168964.1  golgin subfamily A member 4 isoform X5

      Conserved Domains (6) summary
      pfam05483
      Location:4961195
      SCP-1; Synaptonemal complex protein 1 (SCP-1)
      smart00755
      Location:21862229
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG0419
      Location:200746
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      COG1196
      Location:14652152
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:8841711
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cl19219
      Location:884960
      DUF342; Protein of unknown function (DUF342)
    6. XM_017313477.1XP_017168966.1  golgin subfamily A member 4 isoform X7

      Conserved Domains (6) summary
      pfam05483
      Location:4911190
      SCP-1; Synaptonemal complex protein 1 (SCP-1)
      smart00755
      Location:21812224
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG0419
      Location:167724
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      COG1196
      Location:14602147
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:8791706
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cl19219
      Location:879955
      DUF342; Protein of unknown function (DUF342)
    7. XM_017313476.1XP_017168965.1  golgin subfamily A member 4 isoform X6

      Conserved Domains (5) summary
      pfam05483
      Location:4921191
      SCP-1; Synaptonemal complex protein 1 (SCP-1)
      smart00755
      Location:21822225
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:14612148
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:8801707
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cl19219
      Location:880956
      DUF342; Protein of unknown function (DUF342)
    8. XM_017313478.1XP_017168967.1  golgin subfamily A member 4 isoform X8

      Conserved Domains (6) summary
      pfam05483
      Location:4641163
      SCP-1; Synaptonemal complex protein 1 (SCP-1)
      smart00755
      Location:21542197
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG0419
      Location:167714
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      COG1196
      Location:14332120
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:8521679
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cl19219
      Location:852928
      DUF342; Protein of unknown function (DUF342)
    9. XM_017313479.1XP_017168968.1  golgin subfamily A member 4 isoform X9

    10. XM_017313481.1XP_017168970.1  golgin subfamily A member 4 isoform X10

      Conserved Domains (4) summary
      smart00755
      Location:19642007
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:4751274
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:83824
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cl19219
      Location:662738
      DUF342; Protein of unknown function (DUF342)
    11. XM_017313480.1XP_017168969.1  golgin subfamily A member 4 isoform X10

      Conserved Domains (4) summary
      smart00755
      Location:19642007
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:4751274
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:83824
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cl19219
      Location:662738
      DUF342; Protein of unknown function (DUF342)
    12. XM_017313482.1XP_017168971.1  golgin subfamily A member 4 isoform X11

    13. XM_017313483.1XP_017168972.1  golgin subfamily A member 4 isoform X12

    14. XM_017313484.1XP_017168973.1  golgin subfamily A member 4 isoform X13

      Conserved Domains (3) summary
      smart00755
      Location:17691812
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:2801079
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cl19219
      Location:467543
      DUF342; Protein of unknown function (DUF342)
    15. XM_017313485.1XP_017168974.1  golgin subfamily A member 4 isoform X14

    RNA

    1. XR_871211.2 RNA Sequence

    2. XR_871210.2 RNA Sequence

    3. XR_379873.3 RNA Sequence

    4. XR_001778940.1 RNA Sequence

    5. XR_379875.3 RNA Sequence

    6. XR_001778939.1 RNA Sequence

    7. XR_379876.3 RNA Sequence

    8. XR_379874.3 RNA Sequence

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