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    Golga4 golgi autoantigen, golgin subfamily a, 4 [ Mus musculus (house mouse) ]

    Gene ID: 54214, updated on 23-Jun-2021

    Summary

    Official Symbol
    Golga4provided by MGI
    Official Full Name
    golgi autoantigen, golgin subfamily a, 4provided by MGI
    Primary source
    MGI:MGI:1859646
    See related
    Ensembl:ENSMUSG00000038708
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ol; Olp-1; golgin; AI225887; AU019508
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 6.1), placenta adult (RPKM 5.1) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Golga4 in Genome Data Viewer
    Location:
    9; 9 F3
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (118335280..118411587)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (118506196..118582519)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (118415436..118491637)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33408 Neighboring gene predicted gene, 33460 Neighboring gene eomesodermin Neighboring gene family with sequence similarity 64, member A pseudogene Neighboring gene integrin alpha 9 Neighboring gene predicted gene 10157 Neighboring gene predicted gene, 39454

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables GTPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables small GTPase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane protein transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in Golgi vesicle transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in positive regulation of axon extension ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    golgin subfamily A member 4
    Names
    golgin-245
    tGolgin-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_018748.3NP_061218.2  golgin subfamily A member 4

      See identical proteins and their annotated locations for NP_061218.2

      Status: PROVISIONAL

      Source sequence(s)
      AC173340, CT486004
      Consensus CDS
      CCDS40801.1
      UniProtKB/Swiss-Prot
      Q91VW5
      Related
      ENSMUSP00000081880.5, ENSMUST00000084820.6
      Conserved Domains (5) summary
      pfam05483
      Location:4921191
      SCP-1; Synaptonemal complex protein 1 (SCP-1)
      smart00755
      Location:21822225
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:14612148
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:8801707
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cl19219
      Location:880956
      DUF342; Protein of unknown function (DUF342)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      118335280..118411587
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036155104.1XP_036010997.1  golgin subfamily A member 4 isoform X2

      Conserved Domains (3) summary
      smart00755
      Location:22212264
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:7321531
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:1971045
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    2. XM_036155103.1XP_036010996.1  golgin subfamily A member 4 isoform X1

      Conserved Domains (3) summary
      smart00755
      Location:22222265
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:7331532
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:1971046
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    3. XM_036155105.1XP_036010998.1  golgin subfamily A member 4 isoform X3

      Conserved Domains (3) summary
      smart00755
      Location:22222265
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:7331532
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:1971046
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    4. XM_036155106.1XP_036010999.1  golgin subfamily A member 4 isoform X4

      Conserved Domains (3) summary
      smart00755
      Location:22212264
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:7321531
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:1971045
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    5. XM_017313473.3XP_017168962.1  golgin subfamily A member 4 isoform X6

      Conserved Domains (4) summary
      smart00755
      Location:22142257
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:7251524
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:3631074
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR02169
      Location:189453
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    6. XM_036155107.1XP_036011000.1  golgin subfamily A member 4 isoform X8

      Conserved Domains (3) summary
      smart00755
      Location:22142257
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:7251524
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:1971038
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    7. XM_036155108.1XP_036011001.1  golgin subfamily A member 4 isoform X9

      Conserved Domains (3) summary
      smart00755
      Location:21942237
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:7051504
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:1971018
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    8. XM_017313474.3XP_017168963.1  golgin subfamily A member 4 isoform X11

      Conserved Domains (3) summary
      smart00755
      Location:21872230
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:6981497
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:3391047
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    9. XM_017313475.3XP_017168964.1  golgin subfamily A member 4 isoform X12

      Conserved Domains (3) summary
      smart00755
      Location:21862229
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:6971496
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:3391046
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    10. XM_036155111.1XP_036011004.1  golgin subfamily A member 4 isoform X14

      Conserved Domains (2) summary
      smart00755
      Location:21862229
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:6971496
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    11. XM_036155109.1XP_036011002.1  golgin subfamily A member 4 isoform X10

      Conserved Domains (3) summary
      smart00755
      Location:21892232
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:7001499
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:1641017
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    12. XM_017313477.3XP_017168966.1  golgin subfamily A member 4 isoform X16

      Conserved Domains (4) summary
      smart00755
      Location:21812224
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:6921491
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:3301041
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR02169
      Location:156420
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    13. XM_036155113.1XP_036011006.1  golgin subfamily A member 4 isoform X18

      Conserved Domains (3) summary
      smart00755
      Location:21612204
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:6721471
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:164989
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    14. XM_017313479.3XP_017168968.1  golgin subfamily A member 4 isoform X21

      Conserved Domains (3) summary
      smart00755
      Location:21532196
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:6641463
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:3061013
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    15. XM_036155115.1XP_036011008.1  golgin subfamily A member 4 isoform X22

      Conserved Domains (3) summary
      smart00755
      Location:19712014
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:4821281
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:83778
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    16. XM_036155117.1XP_036011010.1  golgin subfamily A member 4 isoform X26

      Conserved Domains (2) summary
      smart00755
      Location:19361979
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:4471246
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    17. XM_017313478.2XP_017168967.1  golgin subfamily A member 4 isoform X19

      Conserved Domains (3) summary
      smart00755
      Location:21542197
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:6651464
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:3061014
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    18. XM_017313476.1XP_017168965.1  golgin subfamily A member 4 isoform X15

      Conserved Domains (4) summary
      smart00755
      Location:21822225
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:6931492
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:3011042
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR02169
      Location:156420
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    19. XM_006512187.5XP_006512250.1  golgin subfamily A member 4 isoform X5

      See identical proteins and their annotated locations for XP_006512250.1

      Conserved Domains (4) summary
      smart00755
      Location:22152258
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:7261525
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:3341075
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR02169
      Location:189453
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    20. XM_006512189.4XP_006512252.1  golgin subfamily A member 4 isoform X7

      Conserved Domains (4) summary
      smart00755
      Location:22152258
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:7261525
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:3341075
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR02169
      Location:189453
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    21. XM_036155110.1XP_036011003.1  golgin subfamily A member 4 isoform X13

      Conserved Domains (2) summary
      smart00755
      Location:21872230
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:6981497
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    22. XM_036155114.1XP_036011007.1  golgin subfamily A member 4 isoform X20

      Conserved Domains (3) summary
      smart00755
      Location:21562199
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:6671466
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:139984
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    23. XM_036155112.1XP_036011005.1  golgin subfamily A member 4 isoform X17

      Conserved Domains (3) summary
      smart00755
      Location:21642207
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:6751474
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:139988
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    24. XM_036155116.1XP_036011009.1  golgin subfamily A member 4 isoform X22

      Conserved Domains (3) summary
      smart00755
      Location:19712014
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:4821281
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:83778
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    25. XM_017313482.3XP_017168971.1  golgin subfamily A member 4 isoform X24

      Conserved Domains (3) summary
      smart00755
      Location:19632006
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:4741273
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:112823
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    26. XM_017313480.3XP_017168969.1  golgin subfamily A member 4 isoform X23

      Conserved Domains (3) summary
      smart00755
      Location:19642007
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:4751274
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:83824
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    27. XM_017313483.1XP_017168972.1  golgin subfamily A member 4 isoform X25

      Conserved Domains (3) summary
      smart00755
      Location:19632006
      Grip; golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
      COG1196
      Location:4741273
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:112823
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RNA

    1. XR_004935483.1 RNA Sequence

    2. XR_004935484.1 RNA Sequence

    3. XR_004935487.1 RNA Sequence

    4. XR_004935486.1 RNA Sequence

    5. XR_004935488.1 RNA Sequence

    6. XR_004935485.1 RNA Sequence

    7. XR_004935489.1 RNA Sequence

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