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    Rab11fip5 RAB11 family interacting protein 5 (class I) [ Mus musculus (house mouse) ]

    Gene ID: 52055, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rab11fip5provided by MGI
    Official Full Name
    RAB11 family interacting protein 5 (class I)provided by MGI
    Primary source
    MGI:MGI:1098586
    See related
    Ensembl:ENSMUSG00000051343
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    RI; GAF; GAF1; RIP11; C75969; D6Ertd32; D6Ertd32e; 9130206P09Rik
    Expression
    Broad expression in testis adult (RPKM 59.8), ovary adult (RPKM 19.7) and 20 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Rab11fip5 in Genome Data Viewer
    Location:
    6 C3; 6 37.35 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (85311944..85351663, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (85334962..85374684, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (85284956..85324628, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene empty spiracles homeobox 1 Neighboring gene sideroflexin 5 Neighboring gene microRNA 705 Neighboring gene RIKEN cDNA 4933423K11 gene Neighboring gene notochord homeobox

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0857

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables gamma-tubulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in centriolar satellite ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in early endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in early endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in intracellular membrane-bounded organelle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial outer membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in phagocytic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in phagocytic vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in recycling endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in recycling endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in secretory granule IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in secretory granule IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    rab11 family-interacting protein 5
    Names
    rab11-FIP5
    rab11-interacting protein Rip11

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003955.2NP_001003955.1  rab11 family-interacting protein 5 isoform 1

      See identical proteins and their annotated locations for NP_001003955.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK129230, BC044833
      Consensus CDS
      CCDS85083.1
      UniProtKB/Swiss-Prot
      Q8R361
      UniProtKB/TrEMBL
      A0A0N4SW73, Q6ZQ33
      Related
      ENSMUSP00000145402.2, ENSMUST00000204087.2
      Conserved Domains (2) summary
      pfam09457
      Location:12661312
      RBD-FIP; FIP domain
      cl14603
      Location:21167
      C2; C2 domain
    2. NM_177466.4NP_803417.3  rab11 family-interacting protein 5 isoform 2

      See identical proteins and their annotated locations for NP_803417.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. It encodes isoform 2, which lacks an internal segment and is shorter, compared to isoform 1.
      Source sequence(s)
      AK129230, BC044833
      Consensus CDS
      CCDS20292.1
      UniProtKB/Swiss-Prot
      Q8R361
      UniProtKB/TrEMBL
      Q6ZQ33
      Related
      ENSMUSP00000058305.8, ENSMUST00000060837.10
      Conserved Domains (2) summary
      pfam09457
      Location:593639
      RBD-FIP; FIP domain
      cl14603
      Location:21167
      C2; C2 domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      85311944..85351663 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506366.3XP_006506429.1  rab11 family-interacting protein 5 isoform X1

      Conserved Domains (2) summary
      pfam09457
      Location:11661212
      RBD-FIP; FIP domain
      cl14603
      Location:21167
      C2; C2 domain
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