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    Imp4 IMP4, U3 small nucleolar ribonucleoprotein [ Mus musculus (house mouse) ]

    Gene ID: 27993, updated on 23-Jun-2021

    Summary

    Official Symbol
    Imp4provided by MGI
    Official Full Name
    IMP4, U3 small nucleolar ribonucleoproteinprovided by MGI
    Primary source
    MGI:MGI:106572
    See related
    Ensembl:ENSMUSG00000026127
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA409888; AV031295; D1Wsu40e
    Expression
    Ubiquitous expression in thymus adult (RPKM 19.3), ovary adult (RPKM 18.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Imp4 in Genome Data Viewer
    Location:
    1 B; 1 13.22 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (34478558..34484828)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (34439829..34445747)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (34496674..34502592)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 37233 Neighboring gene microRNA 5103 Neighboring gene nuclear encoded tRNA glutamic acid 1 (anticodon TTC) Neighboring gene coiled-coil domain containing 115 Neighboring gene predicted gene, 32504 Neighboring gene protein tyrosine phosphatase, non-receptor type 18 Neighboring gene predicted gene 28417

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables rRNA primary transcript binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables snoRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of Mpp10 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of Mpp10 complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of preribosome ISO
    Inferred from Sequence Orthology
    more info
     
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    U3 small nucleolar ribonucleoprotein protein IMP4
    Names
    IMP4, U3 small nucleolar ribonucleoprotein, homolog
    U3 snoRNP protein 4 homolog
    U3 snoRNP protein IMP4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178601.3NP_848716.2  U3 small nucleolar ribonucleoprotein protein IMP4

      See identical proteins and their annotated locations for NP_848716.2

      Status: VALIDATED

      Source sequence(s)
      AK013334, AK084933, DV649342
      Consensus CDS
      CCDS35536.1
      UniProtKB/Swiss-Prot
      Q8VHZ7
      Related
      ENSMUSP00000027303.8, ENSMUST00000027303.14
      Conserved Domains (1) summary
      smart00879
      Location:86253
      Brix; The Brix domain is found in a number of eukaryotic proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      34478558..34484828
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036165638.1XP_036021531.1  U3 small nucleolar ribonucleoprotein protein IMP4 isoform X1

      Conserved Domains (1) summary
      smart00879
      Location:1168
      Brix; The Brix domain is found in a number of eukaryotic proteins
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