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    Bnc2 basonuclin 2 [ Mus musculus (house mouse) ]

    Gene ID: 242509, updated on 20-Mar-2019

    Summary

    Official Symbol
    Bnc2provided by MGI
    Official Full Name
    basonuclin 2provided by MGI
    Primary source
    MGI:MGI:2443805
    See related
    Ensembl:ENSMUSG00000028487
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    5031434M05Rik; 8430420F16Rik
    Expression
    Biased expression in limb E14.5 (RPKM 4.5), bladder adult (RPKM 2.8) and 13 other tissues See more
    Orthologs

    Genomic context

    See Bnc2 in Genome Data Viewer
    Location:
    4; 4 C4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (84266804..84676354, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (83918446..84320990, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene predicted gene 12414 Neighboring gene predicted gene, 33597 Neighboring gene serine incorporator 3 pseudogene Neighboring gene predicted gene 12415

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC124423, MGC124424

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    endochondral bone growth IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mesenchyme development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    NOT regulation of apoptotic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    roof of mouth development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    tongue development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger protein basonuclin-2
    Names
    bnc2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001369081.1NP_001356010.1  zinc finger protein basonuclin-2 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AL772261, AL805919, BX004826
    2. NM_001369082.1NP_001356011.1  zinc finger protein basonuclin-2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL772261, AL805919, BX004826
    3. NM_001369083.1NP_001356012.1  zinc finger protein basonuclin-2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL772137, AL772261, AL805919, BX004826
    4. NM_001369084.1NP_001356013.1  zinc finger protein basonuclin-2 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AL772137, AL772261, AL805919, BX004826
    5. NM_172870.5NP_766458.3  zinc finger protein basonuclin-2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL772137, AL772261, AL805919, BX004826
      Consensus CDS
      CCDS18301.2
      UniProtKB/Swiss-Prot
      Q8BMQ3
      UniProtKB/TrEMBL
      Q2TBA4
      Related
      ENSMUSP00000135375.1, ENSMUST00000176691.7
      Conserved Domains (1) summary
      sd00017
      Location:970991
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      84266804..84676354 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320203.1XP_017175692.1  zinc finger protein basonuclin-2 isoform X1

    2. XM_017320204.1XP_017175693.1  zinc finger protein basonuclin-2 isoform X2

    3. XM_017320205.1XP_017175694.1  zinc finger protein basonuclin-2 isoform X3

      Related
      ENSMUSP00000099884.2, ENSMUST00000102820.8
    4. XM_017320209.1XP_017175698.1  zinc finger protein basonuclin-2 isoform X8

    5. XM_017320207.1XP_017175696.1  zinc finger protein basonuclin-2 isoform X5

    6. XM_017320210.1XP_017175699.1  zinc finger protein basonuclin-2 isoform X9

    7. XM_017320206.1XP_017175695.1  zinc finger protein basonuclin-2 isoform X4

      Conserved Domains (1) summary
      sd00017
      Location:10841105
      ZF_C2H2; C2H2 Zn finger [structural motif]
    8. XM_017320211.1XP_017175700.1  zinc finger protein basonuclin-2 isoform X10

    9. XM_017320208.1XP_017175697.1  zinc finger protein basonuclin-2 isoform X6

    10. XM_017320212.1XP_017175701.1  zinc finger protein basonuclin-2 isoform X11

      Conserved Domains (1) summary
      sd00017
      Location:9891010
      ZF_C2H2; C2H2 Zn finger [structural motif]
    11. XM_017320213.1XP_017175702.1  zinc finger protein basonuclin-2 isoform X12

    12. XM_017320214.1XP_017175703.1  zinc finger protein basonuclin-2 isoform X13

    13. XM_006537933.3XP_006537996.1  zinc finger protein basonuclin-2 isoform X7

      Conserved Domains (1) summary
      sd00017
      Location:10561077
      ZF_C2H2; C2H2 Zn finger [structural motif]
    14. XM_006537940.3XP_006538003.1  zinc finger protein basonuclin-2 isoform X14

      Conserved Domains (1) summary
      sd00017
      Location:490511
      ZF_C2H2; C2H2 Zn finger [structural motif]
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