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    Bnc2 basonuclin 2 [ Mus musculus (house mouse) ]

    Gene ID: 242509, updated on 23-Jun-2021

    Summary

    Official Symbol
    Bnc2provided by MGI
    Official Full Name
    basonuclin 2provided by MGI
    Primary source
    MGI:MGI:2443805
    See related
    Ensembl:ENSMUSG00000028487
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    5031434M05Rik; 8430420F16Rik
    Expression
    Biased expression in limb E14.5 (RPKM 4.5), bladder adult (RPKM 2.8) and 13 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Bnc2 in Genome Data Viewer
    Location:
    4; 4 C3- C4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (84185041..84594132, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (84266804..84676029, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (83918446..84320990, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 42310 Neighboring gene predicted gene, 33597 Neighboring gene serine incorporator 3 pseudogene Neighboring gene predicted gene 12415

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC124423, MGC124424

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables transcription cis-regulatory region binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger protein basonuclin-2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001369081.1NP_001356010.1  zinc finger protein basonuclin-2 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AL772261, AL805919, BX004826
      Conserved Domains (2) summary
      sd00017
      Location:10441065
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:842863
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. NM_001369082.1NP_001356011.1  zinc finger protein basonuclin-2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL772261, AL805919, BX004826
      Conserved Domains (2) summary
      sd00017
      Location:977998
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:775796
      ZF_C2H2; C2H2 Zn finger [structural motif]
    3. NM_001369083.1NP_001356012.1  zinc finger protein basonuclin-2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL772137, AL772261, AL805919, BX004826
      Consensus CDS
      CCDS89773.1
      Related
      ENSMUSP00000102816.3, ENSMUST00000107198.9
      Conserved Domains (2) summary
      sd00017
      Location:10371058
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:835856
      ZF_C2H2; C2H2 Zn finger [structural motif]
    4. NM_001369084.1NP_001356013.1  zinc finger protein basonuclin-2 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AL772137, AL772261, AL805919, BX004826
      Conserved Domains (1) summary
      sd00017
      Location:959980
      ZF_C2H2; C2H2 Zn finger [structural motif]
    5. NM_172870.5NP_766458.3  zinc finger protein basonuclin-2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL772137, AL772261, AL805919, BX004826
      Consensus CDS
      CCDS18301.2
      UniProtKB/Swiss-Prot
      Q8BMQ3
      UniProtKB/TrEMBL
      Q2TBA4
      Related
      ENSMUSP00000135375.2, ENSMUST00000176691.8
      Conserved Domains (1) summary
      sd00017
      Location:970991
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      84185041..84594132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320205.3XP_017175694.1  zinc finger protein basonuclin-2 isoform X3

      Related
      ENSMUSP00000099884.3, ENSMUST00000102820.9
      Conserved Domains (1) summary
      sd00017
      Location:10871108
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. XM_017320209.3XP_017175698.1  zinc finger protein basonuclin-2 isoform X7

      Conserved Domains (1) summary
      sd00017
      Location:10111032
      ZF_C2H2; C2H2 Zn finger [structural motif]
    3. XM_017320210.3XP_017175699.1  zinc finger protein basonuclin-2 isoform X8

      Conserved Domains (1) summary
      sd00017
      Location:9991020
      ZF_C2H2; C2H2 Zn finger [structural motif]
    4. XM_017320204.3XP_017175693.1  zinc finger protein basonuclin-2 isoform X2

      Conserved Domains (1) summary
      sd00017
      Location:10941115
      ZF_C2H2; C2H2 Zn finger [structural motif]
    5. XM_017320211.3XP_017175700.1  zinc finger protein basonuclin-2 isoform X9

      Conserved Domains (1) summary
      sd00017
      Location:9921013
      ZF_C2H2; C2H2 Zn finger [structural motif]
    6. XM_017320212.3XP_017175701.1  zinc finger protein basonuclin-2 isoform X10

      Conserved Domains (2) summary
      sd00017
      Location:9891010
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:787808
      ZF_C2H2; C2H2 Zn finger [structural motif]
    7. XM_017320208.3XP_017175697.1  zinc finger protein basonuclin-2 isoform X5

      Conserved Domains (1) summary
      sd00017
      Location:10661087
      ZF_C2H2; C2H2 Zn finger [structural motif]
    8. XM_017320213.3XP_017175702.1  zinc finger protein basonuclin-2 isoform X11

      Conserved Domains (1) summary
      sd00017
      Location:9811002
      ZF_C2H2; C2H2 Zn finger [structural motif]
    9. XM_030253553.2XP_030109413.1  zinc finger protein basonuclin-2 isoform X12

      Conserved Domains (2) summary
      sd00017
      Location:977998
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:775796
      ZF_C2H2; C2H2 Zn finger [structural motif]
    10. XM_030253552.2XP_030109412.1  zinc finger protein basonuclin-2 isoform X6

      Conserved Domains (2) summary
      sd00017
      Location:10441065
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:842863
      ZF_C2H2; C2H2 Zn finger [structural motif]
    11. XM_017320214.3XP_017175703.1  zinc finger protein basonuclin-2 isoform X1

      Conserved Domains (1) summary
      sd00017
      Location:10091030
      ZF_C2H2; C2H2 Zn finger [structural motif]
    12. XM_030253554.1XP_030109414.1  zinc finger protein basonuclin-2 isoform X14

      Conserved Domains (1) summary
      sd00017
      Location:393414
      ZF_C2H2; C2H2 Zn finger [structural motif]
    13. XM_030253549.1XP_030109409.1  zinc finger protein basonuclin-2 isoform X1

      Conserved Domains (1) summary
      sd00017
      Location:10091030
      ZF_C2H2; C2H2 Zn finger [structural motif]
    14. XM_036164126.1XP_036020019.1  zinc finger protein basonuclin-2 isoform X4

      Conserved Domains (2) summary
      sd00017
      Location:9871008
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:785806
      ZF_C2H2; C2H2 Zn finger [structural motif]
    15. XM_036164127.1XP_036020020.1  zinc finger protein basonuclin-2 isoform X13

      Conserved Domains (1) summary
      sd00017
      Location:393414
      ZF_C2H2; C2H2 Zn finger [structural motif]
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