Format

Send to:

Choose Destination
    • Showing Current items.

    Msantd2 Myb/SANT-like DNA-binding domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 235184, updated on 31-Jan-2019

    Summary

    Official Symbol
    Msantd2provided by MGI
    Official Full Name
    Myb/SANT-like DNA-binding domain containing 2provided by MGI
    Primary source
    MGI:MGI:2384579
    See related
    Ensembl:ENSMUSG00000042138
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810450G17Rik; 9530092B10Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 5.8), CNS E14 (RPKM 5.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Msantd2 in Genome Data Viewer
    Location:
    9; 9 A4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (37487762..37526113)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (37296906..37331750)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene roundabout guidance receptor 4 Neighboring gene roundabout guidance receptor 3 Neighboring gene endothelial cell-specific adhesion molecule Neighboring gene V-set and immunoglobulin domain containing 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC37388

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    myb/SANT-like DNA-binding domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146222.2NP_666334.2  myb/SANT-like DNA-binding domain-containing protein 2

      See identical proteins and their annotated locations for NP_666334.2

      Status: PROVISIONAL

      Source sequence(s)
      BC066002
      Consensus CDS
      CCDS22978.1
      UniProtKB/Swiss-Prot
      Q6NZR2
      Related
      ENSMUSP00000043329.6, ENSMUST00000048604.7
      Conserved Domains (1) summary
      pfam13837
      Location:104195
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      37487762..37526113
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017313318.1XP_017168807.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X5

    2. XM_017313316.1XP_017168805.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X4

    3. XM_017313317.1XP_017168806.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X4

    4. XM_017313315.1XP_017168804.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X4

    5. XM_006510230.3XP_006510293.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X1

      Conserved Domains (1) summary
      pfam13837
      Location:192260
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    6. XM_017313314.1XP_017168803.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X2

    7. XM_006510232.3XP_006510295.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X3

      See identical proteins and their annotated locations for XP_006510295.1

      UniProtKB/Swiss-Prot
      Q6NZR2
    8. XM_006510233.3XP_006510296.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X3

      See identical proteins and their annotated locations for XP_006510296.1

      UniProtKB/Swiss-Prot
      Q6NZR2
      Related
      ENSMUSP00000148195.1, ENSMUST00000211060.1

    RNA

    1. XR_001778867.1 RNA Sequence

    2. XR_001778868.1 RNA Sequence

    3. XR_001778866.1 RNA Sequence

    Support Center