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    Msantd2 Myb/SANT-like DNA-binding domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 235184, updated on 30-Apr-2024

    Summary

    Official Symbol
    Msantd2provided by MGI
    Official Full Name
    Myb/SANT-like DNA-binding domain containing 2provided by MGI
    Primary source
    MGI:MGI:2384579
    See related
    Ensembl:ENSMUSG00000042138 AllianceGenome:MGI:2384579
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810450G17Rik; 9530092B10Rik
    Summary
    Orthologous to human MSANTD2 (Myb/SANT DNA binding domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 5.8), CNS E14 (RPKM 5.1) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Msantd2 in Genome Data Viewer
    Location:
    9 A4; 9 20.77 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (37397034..37437409)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (37487532..37526113)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_23805 Neighboring gene roundabout guidance receptor 4 Neighboring gene STARR-positive B cell enhancer ABC_E5061 Neighboring gene roundabout guidance receptor 3 Neighboring gene STARR-seq mESC enhancer starr_23807 Neighboring gene STARR-seq mESC enhancer starr_23808 Neighboring gene STARR-seq mESC enhancer starr_23809 Neighboring gene STARR-seq mESC enhancer starr_23812 Neighboring gene endothelial cell-specific adhesion molecule Neighboring gene V-set and immunoglobulin domain containing 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC37388

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    myb/SANT-like DNA-binding domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146222.3NP_666334.2  myb/SANT-like DNA-binding domain-containing protein 2

      See identical proteins and their annotated locations for NP_666334.2

      Status: VALIDATED

      Source sequence(s)
      AC105958
      Consensus CDS
      CCDS22978.1
      UniProtKB/Swiss-Prot
      Q6NZR2, Q8R3V3
      UniProtKB/TrEMBL
      A0A6I8MWX7
      Related
      ENSMUSP00000043329.7, ENSMUST00000048604.8
      Conserved Domains (1) summary
      pfam13837
      Location:104195
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      37397034..37437409
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006510230.5XP_006510293.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A6I8MWX7
      Conserved Domains (1) summary
      pfam13837
      Location:192260
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    2. XM_036154882.1XP_036010775.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X4

      Conserved Domains (1) summary
      pfam13837
      Location:192267
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    3. XM_017313314.3XP_017168803.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X2

      Conserved Domains (1) summary
      pfam13837
      Location:107202
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    4. XM_030244294.2XP_030100154.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A1B0GT46
      Related
      ENSMUSP00000148195.2, ENSMUST00000211060.2
    5. XM_036154881.1XP_036010774.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A1B0GT46
    6. XM_006510232.5XP_006510295.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X3

      See identical proteins and their annotated locations for XP_006510295.1

      UniProtKB/TrEMBL
      A0A1B0GT46

    RNA

    1. XR_003947871.2 RNA Sequence

    2. XR_003947869.2 RNA Sequence

    3. XR_004935401.1 RNA Sequence

    4. XR_004935400.1 RNA Sequence

    5. XR_001778867.3 RNA Sequence

    6. XR_003947872.2 RNA Sequence

    7. XR_004935402.1 RNA Sequence