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    Ccnyl1 cyclin Y-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 227210, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ccnyl1provided by MGI
    Official Full Name
    cyclin Y-like 1provided by MGI
    Primary source
    MGI:MGI:2138614
    See related
    Ensembl:ENSMUSG00000070871
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AW554339; 9630037P07Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 21.2), limb E14.5 (RPKM 6.5) and 26 other tissues See more
    Orthologs

    Genomic context

    See Ccnyl1 in Genome Data Viewer
    Location:
    1; 1 C2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (64691041..64725646)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (64737919..64772218)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene 29152 Neighboring gene RIKEN cDNA 2810408I11 gene Neighboring gene frizzled class receptor 5 Neighboring gene pleckstrin homology domain containing, family M, member 3 Neighboring gene leucine rich repeat containing 15 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    cyclin-dependent protein serine/threonine kinase regulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    flagellated sperm motility IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of cyclin-dependent protein serine/threonine kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of protein kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of protein phosphorylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001097644.1NP_001091113.1  cyclin-Y-like protein 1

      See identical proteins and their annotated locations for NP_001091113.1

      Status: VALIDATED

      Source sequence(s)
      AK079350, AK132782, BE944301, CN668580, DV657169
      Consensus CDS
      CCDS48281.1
      UniProtKB/TrEMBL
      E9Q226
      Related
      ENSMUSP00000092499.3, ENSMUST00000094898.4
      Conserved Domains (1) summary
      pfam00134
      Location:93215
      Cyclin_N; Cyclin, N-terminal domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      64691041..64725646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011238499.2XP_011236801.1  cyclin-Y-like protein 1 isoform X1

      Related
      ENSMUSP00000109711.1, ENSMUST00000114077.7
      Conserved Domains (1) summary
      pfam00134
      Location:166288
      Cyclin_N; Cyclin, N-terminal domain
    2. XM_006495953.3XP_006496016.1  cyclin-Y-like protein 1 isoform X2

      See identical proteins and their annotated locations for XP_006496016.1

      Conserved Domains (1) summary
      pfam00134
      Location:122237
      Cyclin_N; Cyclin, N-terminal domain
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