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    Lin52 lin-52 homolog (C. elegans) [ Mus musculus (house mouse) ]

    Gene ID: 217708, updated on 2-Oct-2018

    Summary

    Official Symbol
    Lin52provided by MGI
    Official Full Name
    lin-52 homolog (C. elegans)provided by MGI
    Primary source
    MGI:MGI:3045391
    See related
    Ensembl:ENSMUSG00000085793
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    5830457H20Rik
    Expression
    Ubiquitous expression in frontal lobe adult (RPKM 5.3), cerebellum adult (RPKM 4.9) and 25 other tissues See more
    Orthologs

    Genomic context

    See Lin52 in Genome Data Viewer
    Location:
    12; 12 D1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (84451119..84546515)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (85792458..85872483)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene ring finger protein 113A2 Neighboring gene basal body orientation factor 1 Neighboring gene aldehyde dehydrogenase family 6, subfamily A1 Neighboring gene visual system homeobox 2 Neighboring gene ATP-binding cassette, sub-family D (ALD), member 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    DRM complex IEA
    Inferred from Electronic Annotation
    more info
     
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173756.4NP_776117.1  protein lin-52 homolog

      See identical proteins and their annotated locations for NP_776117.1

      Status: PROVISIONAL

      Source sequence(s)
      AC110564, AC120402
      Consensus CDS
      CCDS49110.1
      UniProtKB/Swiss-Prot
      Q8CD94
      UniProtKB/TrEMBL
      B2RQ11
      Related
      ENSMUSP00000133045.1, ENSMUST00000137170.2
      Conserved Domains (1) summary
      pfam10044
      Location:18111
      LIN52; Retinal tissue protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      84451119..84546515
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515701.3XP_006515764.1  protein lin-52 homolog isoform X1

      See identical proteins and their annotated locations for XP_006515764.1

      Related
      ENSMUSP00000152849.1, ENSMUST00000221033.1
      Conserved Domains (1) summary
      pfam10044
      Location:1898
      LIN52; Retinal tissue protein
    2. XM_017315030.1XP_017170519.1  protein lin-52 homolog isoform X2

      Conserved Domains (1) summary
      pfam10044
      Location:1898
      LIN52; Retinal tissue protein

    RNA

    1. XR_381515.3 RNA Sequence

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