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    Tmem60 transmembrane protein 60 [ Mus musculus (house mouse) ]

    Gene ID: 212090, updated on 9-May-2024

    Summary

    Official Symbol
    Tmem60provided by MGI
    Official Full Name
    transmembrane protein 60provided by MGI
    Primary source
    MGI:MGI:2673965
    See related
    Ensembl:ENSMUSG00000045435 AllianceGenome:MGI:2673965
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM60 (transmembrane protein 60). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in testis adult (RPKM 35.1), CNS E14 (RPKM 14.9) and 23 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Tmem60 in Genome Data Viewer
    Location:
    5 A3; 5 9.83 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (21087451..21091868)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (20882453..20886870)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene putative homeodomain transcription factor 2 Neighboring gene ribosomal protein L31, pseudogene 5 Neighboring gene predicted gene, 42219 Neighboring gene STARR-seq mESC enhancer starr_12553 Neighboring gene STARR-positive B cell enhancer ABC_E1675 Neighboring gene STARR-seq mESC enhancer starr_12554 Neighboring gene round spermatid basic protein 1-like Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:20447096-20447297 Neighboring gene STARR-seq mESC enhancer starr_12555 Neighboring gene RIKEN cDNA A630072M18 gene Neighboring gene STARR-seq mESC enhancer starr_12556 Neighboring gene STARR-seq mESC enhancer starr_12557 Neighboring gene STARR-seq mESC enhancer starr_12559 Neighboring gene STARR-positive B cell enhancer mm9_chr5:20484581-20484882 Neighboring gene STARR-positive B cell enhancer mm9_chr5:20508606-20508906 Neighboring gene protein tyrosine phosphatase, non-receptor type 12 Neighboring gene STARR-positive B cell enhancer ABC_E10306 Neighboring gene STARR-seq mESC enhancer starr_12560 Neighboring gene STARR-positive B cell enhancer mm9_chr5:20561662-20561962

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Gene trapped (1) 

    General gene information

    Markers

    Clone Names

    • MGC38035

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177601.3NP_808269.1  transmembrane protein 60

      See identical proteins and their annotated locations for NP_808269.1

      Status: VALIDATED

      Source sequence(s)
      AK041036, BC027828, CN834017
      Consensus CDS
      CCDS19101.1
      UniProtKB/Swiss-Prot
      Q8BRZ0, Q8K174
      Related
      ENSMUSP00000110914.3, ENSMUST00000115259.3
      Conserved Domains (1) summary
      pfam10269
      Location:25118
      Tmemb_185A; Transmembrane Fragile-X-F protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      21087451..21091868
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)