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    Taf3 TATA-box binding protein associated factor 3 [ Mus musculus (house mouse) ]

    Gene ID: 209361, updated on 2-Oct-2018

    Summary

    Official Symbol
    Taf3provided by MGI
    Official Full Name
    TATA-box binding protein associated factor 3provided by MGI
    Primary source
    MGI:MGI:2388097
    See related
    Ensembl:ENSMUSG00000025782 Vega:OTTMUSG00000011183
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    140kDa; TAF140; AW539625; TAFII140; TAFII-140; mTAFII140; 4933439M23Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 3.3), testis adult (RPKM 3.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Taf3 in Genome Data Viewer
    Location:
    2; 2 A1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (9914552..10048609, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (9836179..9970236, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930412O13 gene Neighboring gene GATA binding protein 3 Neighboring gene RIKEN cDNA 9230102O04 gene Neighboring gene predicted gene 13262 Neighboring gene predicted gene, 31290 Neighboring gene thymosin beta-15A pseudogene Neighboring gene ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 Neighboring gene Kin17 DNA and RNA binding protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    p53 binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cell ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor TFIID complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    transcription initiation factor TFIID subunit 3
    Names
    140 kDa TATA box-binding protein-associated factor
    RNA polymerase II transcription factor, TFIID subunit
    TAF(II)140
    TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa
    TBP-associated factor 3
    transcription initiation factor TFIID 140 kDa subunit

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027748.3NP_082024.2  transcription initiation factor TFIID subunit 3

      Status: VALIDATED

      Source sequence(s)
      AK136045, AW049595, BB621106, BC137618, CX763644
      Consensus CDS
      CCDS15675.1
      UniProtKB/Swiss-Prot
      Q5HZG4
      UniProtKB/TrEMBL
      A2ASY1
      Related
      ENSMUSP00000026888.4, OTTMUSP00000012021, ENSMUST00000026888.10, OTTMUST00000026272
      Conserved Domains (3) summary
      smart00576
      Location:579
      BTP; Bromodomain transcription factors and PHD domain containing proteins
      cd15522
      Location:869914
      PHD_TAF3; PHD finger found in transcription initiation factor TFIID subunit 3 (TAF3)
      pfam16294
      Location:607656
      RSB_motif; RNSP1-SAP18 binding (RSB) motif

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      9914552..10048609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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