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    Rpl18 ribosomal protein L18 [ Mus musculus (house mouse) ]

    Gene ID: 19899, updated on 5-Sep-2021

    Summary

    Official Symbol
    Rpl18provided by MGI
    Official Full Name
    ribosomal protein L18provided by MGI
    Primary source
    MGI:MGI:98003
    See related
    Ensembl:ENSMUSG00000059070
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    L1; Rp; L18; Rpl18a
    Expression
    Ubiquitous expression in colon adult (RPKM 264.4), large intestine adult (RPKM 246.4) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Rpl18 in Genome Data Viewer
    Location:
    7; 7 B3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (45364891..45370259)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (45715467..45720835)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (52973441..52976205)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase 11 Neighboring gene D site albumin promoter binding protein Neighboring gene sphingosine kinase 2 Neighboring gene family with sequence similarity 83, member E Neighboring gene sperm acrosome associated 4 Neighboring gene sulfotransferase family, cytosolic, 2B, member 1 Neighboring gene predicted gene, 31597

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in polysomal ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009077.2NP_033103.2  60S ribosomal protein L18

      See identical proteins and their annotated locations for NP_033103.2

      Status: VALIDATED

      Source sequence(s)
      AK145649, BC081468
      Consensus CDS
      CCDS39958.1
      UniProtKB/Swiss-Prot
      P35980
      UniProtKB/TrEMBL
      Q58EW0, Q642K1
      Related
      ENSMUSP00000072320.7, ENSMUST00000072503.13
      Conserved Domains (1) summary
      pfam17135
      Location:2176
      Ribosomal_L18; Ribosomal protein 60S L18 and 50S L18e

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      45364891..45370259
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242247.1XP_030098107.1  60S ribosomal protein L18 isoform X1

      Related
      ENSMUSP00000147816.2, ENSMUST00000210640.2
      Conserved Domains (1) summary
      pfam17135
      Location:2176
      Ribosomal_L18; Ribosomal protein 60S L18 and 50S L18e
    2. XM_017322049.3XP_017177538.1  60S ribosomal protein L18 isoform X2

      UniProtKB/TrEMBL
      A0A1B0GSF7
      Related
      ENSMUSP00000147918.2, ENSMUST00000209287.2
      Conserved Domains (1) summary
      pfam17135
      Location:1136
      Ribosomal_L18; Ribosomal protein 60S L18 and 50S L18e
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