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    Khsrp KH-type splicing regulatory protein [ Mus musculus (house mouse) ]

    Gene ID: 16549, updated on 4-Jul-2021

    Summary

    Official Symbol
    Khsrpprovided by MGI
    Official Full Name
    KH-type splicing regulatory proteinprovided by MGI
    Primary source
    MGI:MGI:1336214
    See related
    Ensembl:ENSMUSG00000007670
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    K; Fbp2; Ksrp; Fubp2; 6330409F21Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 54.0), thymus adult (RPKM 53.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Khsrp in Genome Data Viewer
    Location:
    17 D; 17 29.63 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (57328049..57338507, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (57021049..57031507, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (57160472..57170930, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene general transcription factor IIF, polypeptide 1 Neighboring gene adenylate kinase 5 pseudogene Neighboring gene solute carrier family 25, member 41 Neighboring gene solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables mRNA 3'-UTR AU-rich region binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mRNA 3'-UTR binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    far upstream element-binding protein 2
    Names
    FUSE-binding protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010613.3NP_034743.3  far upstream element-binding protein 2

      See identical proteins and their annotated locations for NP_034743.3

      Status: VALIDATED

      Source sequence(s)
      BB258658, BB645370, BC108414, CB247078
      Consensus CDS
      CCDS50157.1
      UniProtKB/Swiss-Prot
      Q3U0V1
      Related
      ENSMUSP00000007814.9, ENSMUST00000007814.10
      Conserved Domains (3) summary
      cd00105
      Location:147209
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      pfam00013
      Location:427492
      KH_1; KH domain
      pfam09005
      Location:672686
      DUF1897; Domain of unknown function (DUF1897)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      57328049..57338507 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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