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    Ccnk cyclin K [ Mus musculus (house mouse) ]

    Gene ID: 12454, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ccnkprovided by MGI
    Official Full Name
    cyclin Kprovided by MGI
    Primary source
    MGI:MGI:1276106
    See related
    Ensembl:ENSMUSG00000021258
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CP; CPR4; CycK; AW123198; AW413594
    Expression
    Biased expression in testis adult (RPKM 101.3), limb E14.5 (RPKM 9.5) and 7 other tissues See more
    Orthologs
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    Genomic context

    See Ccnk in Genome Data Viewer
    Location:
    12 F1; 12 59.23 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (108145598..108170250)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (108179308..108203359)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (109417948..109441569)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33341 Neighboring gene B cell leukemia/lymphoma 11B Neighboring gene SET domain containing 3 Neighboring gene coiled-coil domain containing 85C Neighboring gene hedgehog interacting protein-like 1 Neighboring gene cytochrome P450, family 46, subfamily a, polypeptide 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    part_of cyclin K-CDK12 complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of cyclin K-CDK13 complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of cyclin/CDK positive transcription elongation factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009832.2NP_033962.2  cyclin-K

      See identical proteins and their annotated locations for NP_033962.2

      Status: VALIDATED

      Source sequence(s)
      AK146711, CA984404
      Consensus CDS
      CCDS49165.1
      UniProtKB/TrEMBL
      Q3U3M5
      Related
      ENSMUSP00000152784.2, ENSMUST00000221167.2
      Conserved Domains (1) summary
      COG5333
      Location:25217
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      108145598..108170250
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515443.5XP_006515506.1  cyclin-K isoform X1

      See identical proteins and their annotated locations for XP_006515506.1

      UniProtKB/TrEMBL
      Q3U3M5
      Conserved Domains (1) summary
      COG5333
      Location:25217
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
    2. XM_006515444.5XP_006515507.1  cyclin-K isoform X1

      See identical proteins and their annotated locations for XP_006515507.1

      UniProtKB/TrEMBL
      Q3U3M5
      Conserved Domains (1) summary
      COG5333
      Location:25217
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
    3. XM_006515445.3XP_006515508.1  cyclin-K isoform X1

      See identical proteins and their annotated locations for XP_006515508.1

      UniProtKB/TrEMBL
      Q3U3M5
      Conserved Domains (1) summary
      COG5333
      Location:25217
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
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