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    Atp5c1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [ Mus musculus (house mouse) ]

    Gene ID: 11949, updated on 31-Jan-2019

    Summary

    Official Symbol
    Atp5c1provided by MGI
    Official Full Name
    ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1provided by MGI
    Primary source
    MGI:MGI:1261437
    See related
    Ensembl:ENSMUSG00000025781
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Atp5f1c; 1700094F02Rik
    Expression
    Ubiquitous expression in heart adult (RPKM 316.7), kidney adult (RPKM 177.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Atp5c1 in Genome Data Viewer
    Location:
    2; 2 A1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (10056030..10080518, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (9977657..10002137, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31290 Neighboring gene TATA-box binding protein associated factor 3 Neighboring gene thymosin beta-15A pseudogene Neighboring gene Kin17 DNA and RNA binding protein Neighboring gene inter-alpha trypsin inhibitor, heavy chain 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    contributes_to ATPase activity ISO
    Inferred from Sequence Orthology
    more info
     
    proton-transporting ATP synthase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
     
    contributes_to proton-transporting ATPase activity, rotational mechanism IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    ATP biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ATP metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    ATP synthesis coupled proton transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ion transport IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ATP synthase subunit gamma, mitochondrial
    Names
    ATP synthase F1 subunit gamma
    ATP synthase gamma-subunit gene encoding a mitochondrial protein
    F-ATPase gamma subunit
    F1 gamma
    NP_001106209.1
    NP_065640.2
    XP_006497373.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001112738.1NP_001106209.1  ATP synthase subunit gamma, mitochondrial isoform b

      See identical proteins and their annotated locations for NP_001106209.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding region compared to variant 1. The resulting protein (isoform b) has a shorter N-terminus compared to isoform 1.
      Source sequence(s)
      AK158675, BC055785
      Consensus CDS
      CCDS50497.1
      UniProtKB/TrEMBL
      Q3UD06, Q8C2Q8
      Related
      ENSMUSP00000110546.1, ENSMUST00000114896.7
      Conserved Domains (1) summary
      TIGR01146
      Location:2273
      ATPsyn_F1gamma; ATP synthase, F1 gamma subunit
    2. NM_020615.4NP_065640.2  ATP synthase subunit gamma, mitochondrial isoform a

      See identical proteins and their annotated locations for NP_065640.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer protein (isoform a).
      Source sequence(s)
      AK158675, BC055785
      Consensus CDS
      CCDS38045.1
      UniProtKB/Swiss-Prot
      Q91VR2
      UniProtKB/TrEMBL
      Q3UD06
      Related
      ENSMUSP00000110547.2, ENSMUST00000114897.8
      Conserved Domains (1) summary
      TIGR01146
      Location:26297
      ATPsyn_F1gamma; ATP synthase, F1 gamma subunit

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      10056030..10080518 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006497310.2XP_006497373.1  ATP synthase subunit gamma, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A2AKU9
      Related
      ENSMUSP00000026887.7, ENSMUST00000026887.13
      Conserved Domains (1) summary
      TIGR01146
      Location:26297
      ATPsyn_F1gamma; ATP synthase, F1 gamma subunit
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