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    Arf3 ADP-ribosylation factor 3 [ Mus musculus (house mouse) ]

    Gene ID: 11842, updated on 31-Jan-2019

    Summary

    Official Symbol
    Arf3provided by MGI
    Official Full Name
    ADP-ribosylation factor 3provided by MGI
    Primary source
    MGI:MGI:99432
    See related
    Ensembl:ENSMUSG00000051853
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI854770; 5430400P17Rik
    Expression
    Ubiquitous expression in frontal lobe adult (RPKM 216.8), cortex adult (RPKM 209.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Arf3 in Genome Data Viewer
    Location:
    15; 15 F1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (98737624..98763118, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (98568057..98593549, complement)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 65 Neighboring gene FK506 binding protein 11 Neighboring gene wingless-type MMTV integration site family, member 10B Neighboring gene wingless-type MMTV integration site family, member 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    GTP binding TAS
    Traceable Author Statement
    more info
    PubMed 
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    Golgi to plasma membrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein transport TAS
    Traceable Author Statement
    more info
    PubMed 
    retrograde vesicle-mediated transport, Golgi to ER ISO
    Inferred from Sequence Orthology
    more info
     
    vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001355510.1NP_001342439.1  ADP-ribosylation factor 3

      Status: VALIDATED

      Source sequence(s)
      AC156543
      Conserved Domains (1) summary
      cl21455
      Location:5179
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    2. NM_007478.3NP_031504.1  ADP-ribosylation factor 3

      See identical proteins and their annotated locations for NP_031504.1

      Status: VALIDATED

      Source sequence(s)
      AC156543
      Consensus CDS
      CCDS27804.1
      UniProtKB/Swiss-Prot
      P61205
      UniProtKB/TrEMBL
      Q3U344
      Related
      ENSMUSP00000050689.9, ENSMUST00000053183.11
      Conserved Domains (1) summary
      cl21455
      Location:5179
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      98737624..98763118 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011245445.1XP_011243747.1  ADP-ribosylation factor 3 isoform X1

      UniProtKB/Swiss-Prot
      P61205
      UniProtKB/TrEMBL
      Q3U344
      Conserved Domains (1) summary
      cl21455
      Location:5179
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
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