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    Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 [ Mus musculus (house mouse) ]

    Gene ID: 108671, updated on 5-Aug-2018

    Summary

    Official Symbol
    Dnajc9provided by MGI
    Official Full Name
    DnaJ heat shock protein family (Hsp40) member C9provided by MGI
    Primary source
    MGI:MGI:1915326
    See related
    Ensembl:ENSMUSG00000021811
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU020082; 5330419I01Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 60.2), liver E14 (RPKM 44.5) and 26 other tissues See more
    Orthologs

    Genomic context

    See Dnajc9 in Genome Data Viewer
    Location:
    14; 14 A3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (20384638..20388910, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (21203860..21208132, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene ecdysoneless cell cycle regulator Neighboring gene family with sequence similarity 149, member B Neighboring gene predicted gene, 30054 Neighboring gene mitochondrial ribosomal protein S16 Neighboring gene cilia and flagella associated protein 70

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    heat shock protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    heat shock protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    positive regulation of ATPase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    dnaJ homolog subfamily C member 9
    Names
    DnaJ (Hsp40) homolog, subfamily C, member 9

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_134081.5NP_598842.1  dnaJ homolog subfamily C member 9

      See identical proteins and their annotated locations for NP_598842.1

      Status: VALIDATED

      Source sequence(s)
      AK077324, CX238858
      Consensus CDS
      CCDS26844.1
      UniProtKB/Swiss-Prot
      Q91WN1
      Related
      ENSMUSP00000022345.6, ENSMUST00000022345.6
      Conserved Domains (1) summary
      pfam00226
      Location:1579
      DnaJ; DnaJ domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      20384638..20388910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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