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DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 [ Homo sapiens (human) ]

Gene ID: 23234, updated on 5-Jan-2022

Summary

Official Symbol
DNAJC9provided by HGNC
Official Full Name
DnaJ heat shock protein family (Hsp40) member C9provided by HGNC
Primary source
HGNC:HGNC:19123
See related
Ensembl:ENSG00000213551 MIM:611206
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
JDD1; SB73; HDJC9
Summary
Enables chaperone binding activity; heat shock protein binding activity; and histone binding activity. Involved in nucleosome assembly and positive regulation of ATPase activity. Located in several cellular components, including cytosol; extracellular space; and nucleoplasm. Part of chaperone complex. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Ubiquitous expression in bone marrow (RPKM 34.5), lymph node (RPKM 15.2) and 24 other tissues See more
Orthologs
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Genomic context

See DNAJC9 in Genome Data Viewer
Location:
10q22.2
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (73241954..73247255, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (75001712..75007013, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 149 member B1 Neighboring gene uncharacterized LOC105378358 Neighboring gene eukaryotic translation initiation factor 4A2 pseudogene 2 Neighboring gene DNAJC9 and MRPS16 antisense RNA 1 Neighboring gene mitochondrial ribosomal protein S16 Neighboring gene cilia and flagella associated protein 70 Neighboring gene RNA, U6 small nuclear 833, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA0974

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables chaperone binding IDA
Inferred from Direct Assay
more info
PubMed 
enables heat shock protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables heat shock protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables histone binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of ATP-dependent activity IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
part_of chaperone complex IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
located_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
dnaJ homolog subfamily C member 9
Names
DnaJ (Hsp40) homolog, subfamily C, member 9
DnaJ protein SB73

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015190.5NP_056005.1  dnaJ homolog subfamily C member 9

    See identical proteins and their annotated locations for NP_056005.1

    Status: VALIDATED

    Source sequence(s)
    BC136507, BQ002383, BQ954888, BX646217, DA819115
    Consensus CDS
    CCDS7322.1
    UniProtKB/Swiss-Prot
    Q8WXX5
    UniProtKB/TrEMBL
    A0A024QZN2
    Related
    ENSP00000362041.4, ENST00000372950.6
    Conserved Domains (1) summary
    pfam00226
    Location:1579
    DnaJ; DnaJ domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    73241954..73247255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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