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Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 [ Mus musculus (house mouse) ]

Gene ID: 108671, updated on 30-Apr-2024

Summary

Official Symbol
Dnajc9provided by MGI
Official Full Name
DnaJ heat shock protein family (Hsp40) member C9provided by MGI
Primary source
MGI:MGI:1915326
See related
Ensembl:ENSMUSG00000021811 AllianceGenome:MGI:1915326
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5330419I01Rik
Summary
Predicted to enable chaperone binding activity; heat shock protein binding activity; and histone binding activity. Predicted to be involved in nucleosome assembly and positive regulation of ATPase activity. Predicted to be located in several cellular components, including cytosol; extracellular space; and nucleoplasm. Predicted to be part of chaperone complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; brain; connective tissue; genitourinary system; and immune system. Orthologous to human DNAJC9 (DnaJ heat shock protein family (Hsp40) member C9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 60.2), liver E14 (RPKM 44.5) and 26 other tissues See more
Orthologs
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Genomic context

See Dnajc9 in Genome Data Viewer
Location:
14 A3; 14 11.53 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (20434706..20438978, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (20384638..20388910, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene ecdysoneless cell cycle regulator Neighboring gene STARR-seq mESC enhancer starr_36108 Neighboring gene STARR-positive B cell enhancer ABC_E7295 Neighboring gene family with sequence similarity 149, member B Neighboring gene predicted gene, 30054 Neighboring gene STARR-positive B cell enhancer ABC_E7296 Neighboring gene STARR-positive B cell enhancer ABC_E11564 Neighboring gene STARR-positive B cell enhancer ABC_E3105 Neighboring gene RIKEN cDNA 7330404K18 gene Neighboring gene mitochondrial ribosomal protein S16 Neighboring gene cilia and flagella associated protein 70

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables heat shock protein binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables heat shock protein binding ISO
Inferred from Sequence Orthology
more info
 
enables histone binding ISO
Inferred from Sequence Orthology
more info
 
enables protein-folding chaperone binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in nucleosome assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of ATP-dependent activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
part_of protein folding chaperone complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
dnaJ homolog subfamily C member 9
Names
DnaJ (Hsp40) homolog, subfamily C, member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134081.6NP_598842.1  dnaJ homolog subfamily C member 9

    See identical proteins and their annotated locations for NP_598842.1

    Status: VALIDATED

    Source sequence(s)
    AC121801
    Consensus CDS
    CCDS26844.1
    UniProtKB/Swiss-Prot
    Q3TSG3, Q8R0E3, Q91WN1
    Related
    ENSMUSP00000022345.7, ENSMUST00000022345.7
    Conserved Domains (1) summary
    pfam00226
    Location:1579
    DnaJ; DnaJ domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    20434706..20438978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)