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    LOC102783411 U2 snRNP-associated SURP domain containing [ Neolamprologus brichardi ]

    Gene ID: 102783411, updated on 10-Mar-2024

    Summary

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    Gene symbol
    LOC102783411
    Gene description
    U2 snRNP-associated SURP domain containing
    See related
    Ensembl:ENSNBRG00000017162
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Neolamprologus brichardi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus
    Also known as
    u2surp
    Orthologs
    human zebrafish all
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    Genomic context

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    See LOC102783411 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    101 current NeoBri1.0 (GCF_000239395.1) Unplaced Scaffold NW_006272036.1 (4150064..4163525, complement)

    NW_006272036.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA dehydrogenase family member 11-like Neighboring gene ubiquitin-like modifier activating enzyme 5 Neighboring gene atypical chemokine receptor 4b Neighboring gene procollagen C-endopeptidase enhancer 2b Neighboring gene transient receptor potential cation channel, subfamily C, member 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006272036 Unplaced Scaffold Reference NeoBri1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U2 snRNP-associated SURP motif-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Neolamprologus brichardi Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NeoBri1.0 Primary Assembly

    Genomic

    1. NW_006272036.1 Reference NeoBri1.0 Primary Assembly

      Range
      4150064..4163525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035909594.1 → XP_035765487.1  U2 snRNP-associated SURP motif-containing protein

      UniProtKB/TrEMBL
      A0A3Q4HKD2
      Related
      ENSNBRP00000022482.1, ENSNBRT00000023077.1
      Conserved Domains (4) summary
      pfam01805
      Location:367 → 417
      Surp; Surp module
      cd12223
      Location:210 → 293
      RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
      cd21370
      Location:743 → 778
      cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins
      cl02544
      Location:478 → 613
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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