NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_032855.1 RefSeqGene
- Range
-
5214..756063
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_1324
mRNA and Protein(s)
-
NM_001199282.2 → NP_001186211.2 lipopolysaccharide-responsive and beige-like anchor protein isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) differs in the 5' UTR, lacks an alternate in-frame exon, and uses an alternate in-frame splice junction at the 3' end of an exon compared to variant 2. The resulting isoform (1) has the same N- and C-termini but is shorter compared to isoform 2.
- Source sequence(s)
-
AF216648, AF467287
- Consensus CDS
-
CCDS58928.1
- UniProtKB/TrEMBL
-
E9PEM5
- Related
- ENSP00000421552.1, ENST00000510413.5
- Conserved Domains (4) summary
-
- smart01026
Location:2201 → 2478
- Beach; Beige/BEACH domain
- cd01201
Location:2066 → 2169
- PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
- sd00039
Location:2589 → 2625
- 7WD40; WD40 repeat [structural motif]
- cl29593
Location:2594 → 2833
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_001364905.1 → NP_001351834.1 lipopolysaccharide-responsive and beige-like anchor protein isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC092544, AC092612, AC093748, AC097373, AC104796, AC110813
- Consensus CDS
-
CCDS93649.1
- UniProtKB/TrEMBL
- A0A494C1L5, E9PEM5
- Related
- ENSP00000498582.2, ENST00000651943.2
- Conserved Domains (7) summary
-
- sd00039
Location:2589 → 2625
- 7WD40; WD40 repeat [structural motif]
- pfam02138
Location:2202 → 2478
- Beach; Beige/BEACH domain
- pfam06469
Location:1880 → 2047
- DUF1088; Domain of Unknown Function (DUF1088)
- pfam14844
Location:2073 → 2170
- PH_BEACH; PH domain associated with Beige/BEACH
- pfam15787
Location:446 → 717
- DUF4704; Domain of unknown function (DUF4704)
- cl22861
Location:229 → 376
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- cl25539
Location:2594 → 2834
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_001367550.1 → NP_001354479.1 lipopolysaccharide-responsive and beige-like anchor protein isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC079794, AC092544, AC092612, AC093748, AC097373, AC104796, AC110813
- Consensus CDS
-
CCDS93650.1
- UniProtKB/TrEMBL
- A0A494BZW2, E9PEM5
- Related
- ENSP00000498254.2, ENST00000651695.2
-
NM_006726.4 → NP_006717.2 lipopolysaccharide-responsive and beige-like anchor protein isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) encodes the longer isoform (2).
- Source sequence(s)
-
AC092612, AF216648, AF467287
- Consensus CDS
-
CCDS3773.1
- UniProtKB/Swiss-Prot
- P50851, Q4W5J4, Q4W5L6, Q8NFQ0, Q9H2U3, Q9H2U4
- UniProtKB/TrEMBL
-
E9PEM5
- Related
- ENSP00000349629.3, ENST00000357115.9
- Conserved Domains (8) summary
-
- COG2319
Location:2590 → 2857
- WD40; WD40 repeat [General function prediction only]
- pfam02138
Location:2213 → 2489
- Beach; Beige/BEACH domain
- pfam06469
Location:1880 → 2058
- DUF1088; Domain of Unknown Function (DUF1088)
- pfam14844
Location:2084 → 2181
- PH_BEACH; PH domain associated with Beige/BEACH
- pfam15787
Location:446 → 717
- DUF4704; Domain of unknown function (DUF4704)
- sd00039
Location:2600 → 2636
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:2605 → 2845
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- cl22861
Location:229 → 376
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000004.12 Reference GRCh38.p14 Primary Assembly
- Range
-
150264435..151015727 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047416462.1 → XP_047272418.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X4
- UniProtKB/TrEMBL
- A0A494C1L5, E9PEM5
-
XM_005263373.4 → XP_005263430.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X1
- UniProtKB/TrEMBL
-
E9PEM5
- Conserved Domains (8) summary
-
- COG2319
Location:2595 → 2862
- WD40; WD40 repeat [General function prediction only]
- pfam02138
Location:2213 → 2489
- Beach; Beige/BEACH domain
- pfam06469
Location:1880 → 2058
- DUF1088; Domain of Unknown Function (DUF1088)
- pfam14844
Location:2084 → 2181
- PH_BEACH; PH domain associated with Beige/BEACH
- pfam15787
Location:446 → 717
- DUF4704; Domain of unknown function (DUF4704)
- sd00039
Location:2605 → 2641
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:2610 → 2850
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- cl22861
Location:229 → 376
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_005263374.4 → XP_005263431.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X3
- UniProtKB/TrEMBL
- A0A494BZW2, E9PEM5
- Conserved Domains (8) summary
-
- COG2319
Location:2584 → 2851
- WD40; WD40 repeat [General function prediction only]
- pfam02138
Location:2202 → 2478
- Beach; Beige/BEACH domain
- pfam06469
Location:1880 → 2047
- DUF1088; Domain of Unknown Function (DUF1088)
- pfam14844
Location:2073 → 2170
- PH_BEACH; PH domain associated with Beige/BEACH
- pfam15787
Location:446 → 717
- DUF4704; Domain of unknown function (DUF4704)
- sd00039
Location:2594 → 2630
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:2599 → 2839
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- cl22861
Location:229 → 376
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_011532434.3 → XP_011530736.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X2
- UniProtKB/Swiss-Prot
- P50851, Q4W5J4, Q4W5L6, Q8NFQ0, Q9H2U3, Q9H2U4
- UniProtKB/TrEMBL
-
E9PEM5
- Conserved Domains (8) summary
-
- COG2319
Location:2590 → 2857
- WD40; WD40 repeat [General function prediction only]
- pfam02138
Location:2213 → 2489
- Beach; Beige/BEACH domain
- pfam06469
Location:1880 → 2058
- DUF1088; Domain of Unknown Function (DUF1088)
- pfam14844
Location:2084 → 2181
- PH_BEACH; PH domain associated with Beige/BEACH
- pfam15787
Location:446 → 717
- DUF4704; Domain of unknown function (DUF4704)
- sd00039
Location:2600 → 2636
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:2605 → 2845
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- cl22861
Location:229 → 376
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_005263372.4 → XP_005263429.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X1
- UniProtKB/TrEMBL
-
E9PEM5
- Conserved Domains (8) summary
-
- COG2319
Location:2595 → 2862
- WD40; WD40 repeat [General function prediction only]
- pfam02138
Location:2213 → 2489
- Beach; Beige/BEACH domain
- pfam06469
Location:1880 → 2058
- DUF1088; Domain of Unknown Function (DUF1088)
- pfam14844
Location:2084 → 2181
- PH_BEACH; PH domain associated with Beige/BEACH
- pfam15787
Location:446 → 717
- DUF4704; Domain of unknown function (DUF4704)
- sd00039
Location:2605 → 2641
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:2610 → 2850
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- cl22861
Location:229 → 376
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_017008873.3 → XP_016864362.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X5
- UniProtKB/TrEMBL
- A0A8V8TKR0, Q68D03
- Related
- ENSP00000513123.1, ENST00000503716.5
-
XM_017008874.2 → XP_016864363.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X6
- UniProtKB/TrEMBL
-
A0A8V8TLZ6
- Related
- ENSP00000513124.1, ENST00000697127.1
- Conserved Domains (4) summary
-
- sd00039
Location:493 → 529
- 7WD40; WD40 repeat [structural motif]
- pfam02138
Location:101 → 377
- Beach; Beige/BEACH domain
- pfam14844
Location:10 → 69
- PH_BEACH; PH domain associated with Beige/BEACH
- cl25539
Location:498 → 738
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Alternate T2T-CHM13v2.0
Genomic
-
NC_060928.1 Alternate T2T-CHM13v2.0
- Range
-
153588433..154339605 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054351340.1 → XP_054207315.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X4
- UniProtKB/TrEMBL
-
E9PEM5
-
XM_054351337.1 → XP_054207312.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X1
- UniProtKB/TrEMBL
-
E9PEM5
-
XM_054351339.1 → XP_054207314.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X3
- UniProtKB/TrEMBL
-
E9PEM5
-
XM_054351338.1 → XP_054207313.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X2
- UniProtKB/TrEMBL
-
E9PEM5
-
XM_054351336.1 → XP_054207311.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X1
- UniProtKB/TrEMBL
-
E9PEM5
-
XM_054351341.1 → XP_054207316.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X5
- UniProtKB/TrEMBL
- A0A8V8TKR0, Q68D03
-
XM_054351342.1 → XP_054207317.1 lipopolysaccharide-responsive and beige-like anchor protein isoform X6
- UniProtKB/TrEMBL
-
A0A8V8TLZ6