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Txndc9 thioredoxin domain containing 9 [ Mus musculus (house mouse) ]

Gene ID: 98258, updated on 31-Jan-2019

Summary

Official Symbol
Txndc9provided by MGI
Official Full Name
thioredoxin domain containing 9provided by MGI
Primary source
MGI:MGI:2138153
See related
Ensembl:ENSMUSG00000058407
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
APACD; AI098020
Expression
Ubiquitous expression in CNS E11.5 (RPKM 11.2), placenta adult (RPKM 8.5) and 26 other tissues See more
Orthologs

Genomic context

See Txndc9 in Genome Data Viewer
Location:
1; 1 B
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (37983867..37997725, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (38040712..38054053, complement)

Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene lysozyme G-like 2 Neighboring gene lysozyme G-like 1 Neighboring gene eukaryotic translation initiation factor 5B Neighboring gene predicted gene, 34448 Neighboring gene REV1, DNA directed polymerase

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
cell redox homeostasis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
centrosome IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
midbody IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
thioredoxin domain-containing protein 9
Names
ATP binding protein associated with cell differentiation

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172054.4NP_742051.1  thioredoxin domain-containing protein 9

    See identical proteins and their annotated locations for NP_742051.1

    Status: PROVISIONAL

    Source sequence(s)
    AK153857
    Consensus CDS
    CCDS14898.1
    UniProtKB/Swiss-Prot
    Q9CQ79
    Related
    ENSMUSP00000125491.1, ENSMUST00000162031.7
    Conserved Domains (1) summary
    cd02989
    Location:68180
    Phd_like_TxnDC9; Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

    Range
    37983867..37997725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006496358.3XP_006496421.1  thioredoxin domain-containing protein 9 isoform X1

    See identical proteins and their annotated locations for XP_006496421.1

    UniProtKB/Swiss-Prot
    Q9CQ79
    Related
    ENSMUSP00000141609.1, ENSMUST00000195247.5
    Conserved Domains (1) summary
    cd02989
    Location:68180
    Phd_like_TxnDC9; Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human ...
  2. XM_006496357.3XP_006496420.1  thioredoxin domain-containing protein 9 isoform X1

    See identical proteins and their annotated locations for XP_006496420.1

    UniProtKB/Swiss-Prot
    Q9CQ79
    Related
    ENSMUSP00000141595.1, ENSMUST00000195032.5
    Conserved Domains (1) summary
    cd02989
    Location:68180
    Phd_like_TxnDC9; Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human ...
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