TBC1D27P TBC1 domain family member 27, pseudogene [Homo sapiens (human)] - Gene

Summary

Official Symbol: TBC1D27Pprovided by HGNC
Official Full Name: TBC1 domain family member 27, pseudogeneprovided by HGNC
Primary source: HGNC:HGNC:28104
See related: AllianceGenome:HGNC:28104
Gene type: pseudo
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: TBC1D27
Expression: Biased expression in spleen (RPKM 5.9), lymph node (RPKM 2.7) and 5 other tissues See more
Orthologs: all
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Genomic context

Location:: 17p11.2

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
110	current	GRCh38.p14 (GCF_000001405.40)	17	NC_000017.11 (16922776..16933176, complement)
110	current	T2T-CHM13v2.0 (GCF_009914755.1)	17	NC_060941.1 (16868855..16879255, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	17	NC_000017.10 (16826090..16836490, complement)

Chromosome 17 - NC_000017.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
Observational study of gene-disease association. (HuGE Navigator)
Title: Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity.

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

SHGC-145661 (e-PCR)
- UniSTS:183040

SHGC-149523 (e-PCR)
- UniSTS:183049

SHGC-64270 (e-PCR)
- UniSTS:53816

NoName (e-PCR)
- UniSTS:485707

D10S16 (e-PCR)
- UniSTS:155756

D17S844 (e-PCR)
- UniSTS:147569

D17S445 (e-PCR)
- UniSTS:146826

D5S1597E (e-PCR)
- UniSTS:151019

Homology

Orthologs from Annotation Pipeline: 5 organisms have orthologs with human gene TBC1D27P

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.