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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_053162.1 RefSeqGene
- Range
-
5130..83063
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001330764.2 → NP_001317693.1 protein NOXP20 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1.
- Source sequence(s)
-
AC108044, AI073679, CB306584, CN255669, DA130633, DA722033, HY086889
- Consensus CDS
-
CCDS82916.1
- UniProtKB/TrEMBL
-
B4E1Z8
- Related
- ENSP00000424115.1, ENST00000515037.5
-
NM_001350631.2 → NP_001337560.1 protein NOXP20 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC108044
- UniProtKB/TrEMBL
-
B4E1Z8
- Conserved Domains (1) summary
-
- pfam05334
Location:1 → 92
- DUF719; Protein of unknown function (DUF719)
-
NM_001350632.2 → NP_001337561.1 protein NOXP20 isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC108044
- Conserved Domains (1) summary
-
- pfam05334
Location:135 → 297
- DUF719; Protein of unknown function (DUF719)
-
NM_001350633.2 → NP_001337562.1 protein NOXP20 isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC108044
- UniProtKB/TrEMBL
-
B4E1Z8
- Conserved Domains (1) summary
-
- pfam05334
Location:11 → 172
- DUF719; Protein of unknown function (DUF719)
-
NM_001350634.2 → NP_001337563.1 protein NOXP20 isoform 7
Status: REVIEWED
- Source sequence(s)
-
AC108044
- UniProtKB/TrEMBL
-
B4DL61
- Conserved Domains (1) summary
-
- pfam05334
Location:22 → 101
- DUF719; Protein of unknown function (DUF719)
-
NM_001350635.3 → NP_001337564.1 protein NOXP20 isoform 8
Status: REVIEWED
- Source sequence(s)
-
AC108044
- Conserved Domains (1) summary
-
- pfam05334
Location:135 → 299
- DUF719; Protein of unknown function (DUF719)
-
NM_001375792.1 → NP_001362721.1 protein NOXP20 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AC108044
- Consensus CDS
-
CCDS3447.1
- UniProtKB/Swiss-Prot
- A8K9W6, Q6MZV4, Q8IWE2, Q9BVL6
- Conserved Domains (1) summary
-
- pfam05334
Location:135 → 299
- DUF719; Protein of unknown function (DUF719)
-
NM_001375793.1 → NP_001362722.1 protein NOXP20 isoform 9
Status: REVIEWED
- Source sequence(s)
-
AC108044
- Conserved Domains (1) summary
-
- pfam05334
Location:135 → 299
- DUF719; Protein of unknown function (DUF719)
-
NM_138389.4 → NP_612398.2 protein NOXP20 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1)
- Source sequence(s)
-
AC108044, AI073679, CB306584, CN255669, DA130633, DA722033, DA755915, HY086889
- Consensus CDS
-
CCDS3447.1
- UniProtKB/Swiss-Prot
- A8K9W6, Q6MZV4, Q8IWE2, Q9BVL6
- Related
- ENSP00000351740.2, ENST00000358869.5
- Conserved Domains (1) summary
-
- pfam05334
Location:135 → 299
- DUF719; Protein of unknown function (DUF719)
RNA
-
NR_033290.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks two consecutive internal exons, compared to variant 1. This variant is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with translation of the longest ORF; translation of the upstream ORF renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC108044, AK304050
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000004.12 Reference GRCh38.p14 Primary Assembly
- Range
-
38867806..38945739
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047416412.1 → XP_047272368.1 protein NOXP20 isoform X1
- UniProtKB/TrEMBL
-
B4E1Z8
Alternate T2T-CHM13v2.0
Genomic
-
NC_060928.1 Alternate T2T-CHM13v2.0
- Range
-
38837934..38915794
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054351251.1 → XP_054207226.1 protein NOXP20 isoform X1
- UniProtKB/TrEMBL
-
B4E1Z8